zardda

AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

CAGECAT

CompArative GEne Cluster Analysis Toolbox

circle

Draw anything with discrete fourier transform.

damidseq_pipeline

An automated pipeline for processing DamID sequencing datasets

data-analysis-for-life-science

Rmd source files for the HarvardX series PH525x

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

EDTA

Extensive de-novo TE Annotator

gfold

This is an official replacement for https://bitbucket.org/feeldead/gfold

plot-phylogenetic-tree

zardda/circle

Draw anything with discrete fourier transform.

zardda/damidseq_pipeline

An automated pipeline for processing DamID sequencing datasets

zardda/data-analysis-for-life-science

Rmd source files for the HarvardX series PH525x

zardda/plot-phylogenetic-tree

zardda/AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

zardda/annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

zardda/CAGECAT

CompArative GEne Cluster Analysis Toolbox

zardda/docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

zardda/EDTA

Extensive de-novo TE Annotator

zardda/gfold

This is an official replacement for https://bitbucket.org/feeldead/gfold

zardda/GWA_tutorial

A comprehensive tutorial about GWAS and PRS

zardda/Plot-phylogenetic-tree-and-Alignment-in-python

zardda/pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

zardda/REDItools

REDItools are python scripts to investigate RNA editing at genomic scale.

zardda/observable-d3

zardda/tgirke.github.io

Website