zbarry
Bioengineer striving to develop computational tools to drive biological science and drug discovery with a focus on microscopy image analysis
Spring DiscoveryCambridge, MA
Pinned Repositories
pyjanitor
Clean APIs for data cleaning. Python implementation of R package Janitor
dask-notes
holoviews-notes
pybbbc
Python interface and preprocessing pipeline for the BBBC021 dataset of cellular images
pytorch-hcs
Predict drug mechanism of action from high content screening images using PyTorch
ray-notes
Notes based on my exploration of the Ray distributed multiprocessing library
zbarry's Repositories
zbarry/pytorch-hcs
Predict drug mechanism of action from high content screening images using PyTorch
zbarry/dask-notes
zbarry/holoviews-notes
zbarry/pybbbc
Python interface and preprocessing pipeline for the BBBC021 dataset of cellular images
zbarry/ray-notes
Notes based on my exploration of the Ray distributed multiprocessing library
zbarry/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
zbarry/caiman-feedstock
A conda-smithy repository for caiman.
zbarry/casmls.github.io
Columbia Advanced Machine Learning Seminar
zbarry/cudadecon-feedstock
A conda-smithy repository for cudadecon.
zbarry/DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals including humans
zbarry/dsprites-dataset
Dataset to assess the disentanglement properties of unsupervised learning methods
zbarry/holoviews
Stop plotting your data - annotate your data and let it visualize itself.
zbarry/intake
Intake is a lightweight package for finding, investigating, loading and disseminating data.
zbarry/jupyterlab-lsp
Language Server Protocol integration for JupyterLab (code navigation + hover suggestions + linters + autocompletion + rename)
zbarry/nocode
The best way to write secure and reliable applications. Write nothing; deploy nowhere.
zbarry/pycudadecon
Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
zbarry/pyjanitor
Python implementation of R package Janitor
zbarry/PyTyphoon
Python implementation of Typhoon algorithm: dense estimation of 2D-3D optical flow on wavelet bases.
zbarry/ray
A system for parallel and distributed Python that unifies the ML ecosystem.
zbarry/snap
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
zbarry/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
zbarry/yogo
The "you only glance once" object detection model