Course project of Computational Biology.
wget http://download.gao-lab.org/GLUE/tutorial/Chen-2019-RNA.h5ad
wget http://download.gao-lab.org/GLUE/tutorial/Chen-2019-ATAC.h5ad
wget ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M25/gencode.vM25.chr_patch_hapl_scaff.annotation.gtf.gz
pip install torch-scatter
python setup.py develop # Build scglue
python data_preprocessing.py
python train.py
The project is based on https://github.com/gao-lab/GLUE