Pinned Repositories
coloc
Collection of scripts for colocalization with R analysis
CTGCatalog
A collection of commonly used resources for complex trait genetics.
easyMRbasic_R
epigraphdb-breast-cancer
Breast cancer risk factors exploration with MR-EvE and literature-mined data in EpiGraphDB
eQTpLot
Visualization of Colocalization Between eQTL and GWAS Data
fatty-acids
Fine_Mapping
Fine mapping of genes associated with Parkinson's Disease using a variety of methods
FUMA-webapp
Source code of FUMA GWAS web application
GagnonMR
symatrial
Analysis code for the symatrial project
zerland's Repositories
zerland/easyMRbasic_R
zerland/CTGCatalog
A collection of commonly used resources for complex trait genetics.
zerland/epigraphdb-breast-cancer
Breast cancer risk factors exploration with MR-EvE and literature-mined data in EpiGraphDB
zerland/FUMA-webapp
Source code of FUMA GWAS web application
zerland/GagnonMR
zerland/GbyE
Effect model of gene-environment interaction, involved in predictive analysis of GWAS and GS
zerland/INF
SCALLOP-INF analysis
zerland/smrivw
SMR-IVW extension of the SMR software
zerland/vargen
VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the results. You can also use your own customised list of genes. VarGen is capable of annotating the variants to help you identify the most impactful ones.
zerland/allCardiacMRI
Genome-wide association on left atrial volume and function
zerland/BESIDEMR
BayEsian Set IDEntification Mendelian randomization
zerland/Brain_pQTL
zerland/eQTL-Catalogue-resources
zerland/ewas-gwas-comparisons
zerland/fmdmr
zerland/GWASpops.pheno2geno
R package for GWAS catalog extension which collects and visualizes allele frequency population data
zerland/INTACT
Integration of TWAS and Colocalization Analysis
zerland/LAVA
zerland/LocoColoc
Consolidation of ColocQuiaL, eQTLPlot and Sudha's Gene Based Coloc tools
zerland/machine_learning
Machine learning in R
zerland/MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
zerland/metabrain
Various scripts to process RNAseq data for brain eQTL analysis
zerland/mr.genius
A R package implements GENIUS-MAWII. Reference: Ting Ye, Zhonghua Liu, Baoluo Sun, and Eric Tchetgen Tchetgen (2021). GENIUS-MAWII: For Robust Mendelian Randomization with Many Weak Invalid Instruments.
zerland/MR_template
Template for running PWMR on Rosalind
zerland/mrbma
Mendelian Randomization Bayesian Model Averaging
zerland/R-scripts
Basic R code
zerland/rGREAT
GREAT Analysis - Functional Enrichment on Genomic Regions
zerland/scScalpChromatin
zerland/susieR
R package for "sum of single effects" regression.
zerland/systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool