Pinned Repositories
6018_2017
Repository for DBMI 6018 Course Fall 2017
691-Project
Distant Authorities Project
Ab-Initio-Protein-Structure-Prediction
alphafold
Open source code for AlphaFold.
biojupies-plugins
User-submitted RNA-seq data analysis tools for BioJupies.
practicaldatascience.github.io
PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
repurpose
Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers
zeromtmu's Repositories
zeromtmu/alphafold
Open source code for AlphaFold.
zeromtmu/Alphafold2
Alphafold Api for protein Visualization
zeromtmu/bamsnap
zeromtmu/CCBR_GATK4_Exome_Seq_Pipeline
An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH
zeromtmu/ClinVar
XGBoost classifiers to predict variant classification conflict
zeromtmu/clinvar-miner
Website to analyze conflicting assertions in ClinVar
zeromtmu/coding-guidelines
Coding guidelines and best practices for developers @uniport @embl-ebi
zeromtmu/ColabFold
Making Protein folding accessible to all!
zeromtmu/community-notebooks
Community notebooks for the lab
zeromtmu/compchem
Computational Chemistry stuff
zeromtmu/cs-video-courses
List of Computer Science courses with video lectures.
zeromtmu/deep-learning-skooldio
Deep learning notebooks for Skooldio
zeromtmu/detectDesign
toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expression
zeromtmu/EHR-Phenolyzer
A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
zeromtmu/examples
GPT
zeromtmu/gatk_pipeline
Pipeline for processing raw fastq files through SNP calling with GATK and subsequent filtering
zeromtmu/gpt4-pdf-chatbot-langchain
GPT4 & LangChain Chatbot for large PDF docs
zeromtmu/ibm3202
Google Colab Tutorials for IBM3202
zeromtmu/ipyvizzu
Build animated charts in Jupyter notebook with a simple Python synthax.
zeromtmu/ML-For-Beginners
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
zeromtmu/openmm-tutorial-msbs
OpenMM tutorial for the MSBS course
zeromtmu/panel
A high-level app and dashboarding solution for Python
zeromtmu/popgen-notes
Population genetics notes
zeromtmu/programmer-class-room
เอกสารประกอบการสอนทุกเนื้อหาในช่องยูทูป KongRuksiam Official
zeromtmu/pydbsnp
Interface with dbSNP VCF data
zeromtmu/pyhpo
A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
zeromtmu/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
zeromtmu/SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
zeromtmu/SPDBUE
Jupyter-notebook for scraping protein structures from the Uniprot database.
zeromtmu/uniprot-scripts