Pinned Repositories
ARG_metagenome
Metagenomic analysis workflow for the identification and quantification of antimicrobial resistance genes (ARG) from human stool samples..
BLAST-quantifying
BLAST output to dictionary to heatmap
kraken2
The second version of the Kraken taxonomic sequence classification system
Marco_Lab
A repository for Marco lab to store and share work-in-progress scripts for data analysis and visualization in R, python or other languages. The final code for publication can be viewed at repos that linked with paper.
Mock_Community2
semester-biology
shell-genomics
speeding-up-sci-correlation
Visualization codes from the 2nd "speeding up science workshop". This repository contains codes to plot and calculate correlation (linear regression) between metagenomic and metatranscriptomic sequencing results acquired from the same sample.
speeding-up-sci-heatmap-barplot
Visualization codes from the first "speeding up science workshop". This repository contains codes to make heatmap and stacked bar plots for metatranscriptomic function and RNA-based taxonomy summaries.
zeyaxue.github.io
The personal website of Zeya Xue.
zeyaxue's Repositories
zeyaxue/ARG_metagenome
Metagenomic analysis workflow for the identification and quantification of antimicrobial resistance genes (ARG) from human stool samples..
zeyaxue/BLAST-quantifying
BLAST output to dictionary to heatmap
zeyaxue/kraken2
The second version of the Kraken taxonomic sequence classification system
zeyaxue/Marco_Lab
A repository for Marco lab to store and share work-in-progress scripts for data analysis and visualization in R, python or other languages. The final code for publication can be viewed at repos that linked with paper.
zeyaxue/Mock_Community2
zeyaxue/semester-biology
zeyaxue/shell-genomics
zeyaxue/speeding-up-sci-correlation
Visualization codes from the 2nd "speeding up science workshop". This repository contains codes to plot and calculate correlation (linear regression) between metagenomic and metatranscriptomic sequencing results acquired from the same sample.
zeyaxue/speeding-up-sci-heatmap-barplot
Visualization codes from the first "speeding up science workshop". This repository contains codes to make heatmap and stacked bar plots for metatranscriptomic function and RNA-based taxonomy summaries.
zeyaxue/zeyaxue.github.io
The personal website of Zeya Xue.
zeyaxue/Spoon-Knife
This repo is for demonstration purposes only.
zeyaxue/workflow_demo
This repository is intended to use as a demo about how I organize my research projects: from data to manuscript.