Pinned Repositories
cdrug2
Code for "Revisiting Inconsistency in Large Pharmacogenomic Studies"
PharmacoGx
R package to analyze large-scale pharmacogenomic datasets.
PharmacoGxML
Workshop for Machine Learning in pharmacogenomics
RNASeqDrug
Gene isoforms as expression-based biomarkers predictive of drug response in vitro
wCI
Modified Concordance Index for pharmacological readout
BiocWorkshops
Workshops for learning Bioconductor
Challenges
Dockerfile
Collection of Bioinformatics related Dockerfiles
gr50_tools
We have developed scripts to calculate normalized growth rate inhibition (GR) values and corresponding metrics (GR50, GRmax, …) based on cell counts measured in results of dose-response experiments
Rnaseq_pipelines
zhaleh-safikhani's Repositories
zhaleh-safikhani/BiocWorkshops
Workshops for learning Bioconductor
zhaleh-safikhani/Challenges
zhaleh-safikhani/Dockerfile
Collection of Bioinformatics related Dockerfiles
zhaleh-safikhani/gr50_tools
We have developed scripts to calculate normalized growth rate inhibition (GR) values and corresponding metrics (GR50, GRmax, …) based on cell counts measured in results of dose-response experiments
zhaleh-safikhani/Rnaseq_pipelines
zhaleh-safikhani/TCGA_GTEX_TOIL
This repository contains scripts to create R data objects containing transcript/gene level expression(tpm)/counts for any particular tissue type