A summary of the available resources is available in /docs/index.html - please view this first. Detailed READMEs specific to subfolders are available within them.
There are 4 folders of interest in this workflowr.
(1) analysis - contains code needed to generate each figure, table and supplementary figure of the paper.
(2) code - This contains code needed to generate ARTEMIS features and to train ARTEMIS and ARTEMIS-DELFI models, as well as some packages with functions used by other code in this repository.
(3) data - This contains raw data used to generate the figures and tables.
(4) docs - This contains html of the markdown files in analysis, as well as the generated figures.
SessionInfo.Rmd in the analysis folder, and the corresponding html in the docs folder document the versions of packages used to compile this repo.
This repository is available on Github, and may be run as a workflowr project to generate a webpage with all code and figures linked. [workflowr]: https://github.com/jdblischak/workflowr