Pinned Repositories
BrainAlign
Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"
CAME
Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
ConsTADs
Consensus TADs
DeepLearningTheory.course
Deep Learning Theory course
DNADataAugmentation
Source code for paper 'Simple tricks of convolutional neural network architectures improve DNA–protein binding prediction'. In addition, some reusable code is also sort out for further use.
DSMO.course
Data Science and Matrix Optimization course
MSTD
MSTD is a generic and efficient method to identify multi-scale topological domains (MSTD) from symmetric Hi-C and other high resolution asymmetric promoter capture Hi-C datasets.
STAGATE
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
STAGE
STAligner
STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
zhanglabtools's Repositories
zhanglabtools/DSMO.course
Data Science and Matrix Optimization course
zhanglabtools/STAGATE
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
zhanglabtools/STAligner
STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
zhanglabtools/DeepLearningTheory.course
Deep Learning Theory course
zhanglabtools/BrainAlign
Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"
zhanglabtools/STAGE
zhanglabtools/CAME
Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
zhanglabtools/AI4OR.course
Artificial Intelligence for Operations Research course
zhanglabtools/ConsTADs
Consensus TADs
zhanglabtools/scHi-CSim
scHi-CSim, a simulator for generating single-cell Hi-C data.
zhanglabtools/stagewiseNN
Constructing developmental tree from scRNA-seq data
zhanglabtools/STAMarker
STAMarker: Identify Spatial Domain-specific Variable Genes via Ensemble Graph Attention Autoencoders
zhanglabtools/ADC
source code for ADC
zhanglabtools/dbmd
Distributed Matrix Decomposition for Big Data Mining and Clustering
zhanglabtools/ImputeHiFI
ImputeHiFI: An Imputation Method for Multiplexed DNA FISH Data by Utilizing Single-Cell Hi-C and RNA FISH Data
zhanglabtools/STALocator
zhanglabtools/STAMapper
zhanglabtools/TADGATE
TADGATE is a computational tool to identify TADs in Hi-C contact map with a graph attention autoencoder.
zhanglabtools/CAMEX
zhanglabtools/CASAVA
Resources of our paper CASAVA
zhanglabtools/Mactop
deciphering chromatin domain, domain community and chromunity for 3D genome maps
zhanglabtools/MN-PCA
Matrix normal PCA for interpretable dimension reduction and graphical noise modeling
zhanglabtools/SmartGate
zhanglabtools/STADIA
zhanglabtools/BMD-MoG
The code file for paper BMD-MoG. main file: BMD_MoG.m
zhanglabtools/CAMUS
zhanglabtools/hicsrkit
A package used to enhance Hi-C maps with deep learning
zhanglabtools/STABox
Interactive analysis and visualization of spatial transcriptome GUI program
zhanglabtools/STASCAN
zhanglabtools/TWAE
A non-adversarial generative autoencoder with divide-and-conquer strategy