/Levodopa_Parkinson_MRI

Primary LanguageJupyter Notebook

TODO

  1. Replace preprocessing pipeline with Nipype (Only available on Linux)

    1. Original CAT12 pipeline
    2. HCP pipeline (T2 needed?)

  2. Image feature extraction pipeline

    1. Input: Image from preprocessing pipeline
    2. Output: Feature array to be concatenated to baseline non-imaging data

  3. Estimate pipeline (Build based on baseline non-imaging data)

    1. Tasks (Classification(2/N)/Regression)
    2. Models
    3. Metrics

  4. Hyper and control parameters should be tweaked by config file(s)

  5. Pass results and paths via json files between different pipelines