zhangrengang/SubPhaser

Can't install SubPhaser: : Found conflicts! Looking for incompatible packages.

awesomedeer opened this issue · 9 comments

awesomedeer commented

Dear Dr Zhang
Thanks for developing this useful tool.
Unfortunately, I was stuck in the installation step of SubPhaser.
When I run
conda env create -f SubPhaser.yaml
The conda environment can not be set up and errors like
`Collecting package metadata (repodata.json): done
Solving environment: Found conflicts! Looking for incompatible packages.
...
The following specifications were found to be incompatible with your system:

  • feature:/linux-64::__glibc==2.17=0
  • feature:|@/linux-64::__glibc==2.17=0
  • biopython==1.79=py38h497a2fe_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • blast==2.11.0=pl526he19e7b1_0 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
    ...
    Your installed version is: 2.17
    `
    Looking forward to your responses.
zhangrengang commented

hi @awesomedeer , it seems that there are some incompatibility with your system or conda. Please provide more information about versions of your system, glibc, conda and python (maybe too high versions). And please paste the full log of the errors.

  • 🚀1
awesomedeer commented

system
Linux admin 3.10.0-693.el7.x86_64 #1 SMP Tue Aug 22 21:09:27 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
glibc
ldd (GNU libc) 2.17
conda
conda 22.11.0
python
Python 2.7.5

zhangrengang commented

@awesomedeer The system and glibc is normal. Maybe the python version is too low, as subphaser is based on python3.8. Can you try to install an update conda with python3 in default？

  • 🚀1
awesomedeer commented

@zhangrengang
I have installed the python 3.8.8 independetly
(SubPhaser) [wusong@admin SubPhaser]$ conda list
packages in environment at /public/home/wusong/miniconda3/envs/SubPhaser:

Name Version Build Channel
_libgcc_mutex 0.1 conda_forge defaults
_openmp_mutex 4.5 2_gnu defaults
ca-certificates 2022.10.11 h06a4308_0 defaults
ld_impl_linux-64 2.39 hcc3a1bd_1 defaults
libffi 3.3 h58526e2_2 defaults
libgcc 7.2.0 h69d50b8_2 defaults
libgcc-devel_linux-64 9.4.0 hd854feb_8 defaults
libgcc-ng 11.1.0 hc902ee8_8 defaults
libgomp 11.1.0 hc902ee8_8 defaults
libstdcxx-ng 12.2.0 h46fd767_19 defaults
libzlib 1.2.11 h166bdaf_1014 defaults
ncurses 6.3 h27087fc_1 defaults
openssl 1.1.1s h7f8727e_0 defaults
pip 22.3.1 pyhd8ed1ab_0 defaults
python 3.8.8 hdb3f193_5 defaults
readline 8.1.2 h7f8727e_1 defaults
setuptools 65.5.1 pyhd8ed1ab_0 defaults
sqlite 3.38.2 hc218d9a_0 defaults
tk 8.6.12 h27826a3_0 defaults
wheel 0.38.4 pyhd8ed1ab_0 defaults
xz 5.2.5 h7f8727e_1 defaults
zlib 1.2.11 h166bdaf_1014 defaults

although when I install using the yaml file it still does not work.

awesomedeer commented

Package r-scales conflicts for:
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-scales[version='>=0.5.0']
r-aplot==0.0.6=r40hc72bb7e_0 -> r-ggplot2 -> r-scales[version='>=0.3.0|>=0.4.1|>=0.5.0']
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-ggplot2[version='>=3.0.0'] -> r-scales[version='>=0.5.0']
r-scales==1.1.1=r40hc72bb7e_0
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-scales
r-patchwork==1.1.1=r40hc72bb7e_0 -> r-ggplot2[version='>=3.0.0'] -> r-scales[version='>=0.5.0']

Package perl-parent conflicts for:
perl-http-cookies==6.04=pl526_0 -> perl-time-local -> perl-parent
perl-uri==1.76=pl526_0 -> perl-parent
perl-time-local==1.28=pl526_1 -> perl-parent
perl-parent==0.236=pl526_1
perl-libwww-perl==6.39=pl526_0 -> perl-encode -> perl-parent
perl-www-robotrules==6.02=pl526_3 -> perl-uri -> perl-parent
perl-encode-locale==1.05=pl526_6 -> perl-encode -> perl-parent
perl-http-message==6.18=pl526_0 -> perl-encode -> perl-parent
perl-http-date==6.02=pl526_3 -> perl-time-local -> perl-parent
perl-xml-sax==1.02=pl526_0 -> perl-file-temp -> perl-parent
perl-encode==2.88=pl526_1 -> perl-parent
entrez-direct==13.9=pl5262he881be0_2 -> perl-uri -> perl-parent
perl-file-temp==0.2304=pl526_2 -> perl-parent
perl-net-http==6.19=pl526_0 -> perl-uri -> perl-parent

Package perl-text-format conflicts for:
circos==0.69.2=0 -> perl-text-format
perl-text-format==0.59=pl526_2

Package perl-io-compress conflicts for:
blast==2.11.0=pl526he19e7b1_0 -> perl-archive-tar -> perl-io-compress
perl-io-compress==2.087=pl526he1b5a44_0
perl-archive-tar==2.32=pl526_0 -> perl-io-compress

Package pillow conflicts for:
matplotlib-base==3.4.3=py38hf4fb855_0 -> pillow[version='>=6.2.0']
svglib==1.1.0=py38h578d9bd_0 -> reportlab -> pillow[version='>=2.4.0|>=4.0.0']
reportlab==3.5.68=py38hadf75a6_0 -> pillow[version='>=2.4.0']
matplotlib==3.4.3=py38h578d9bd_0 -> matplotlib-base[version='>=3.4.3,<3.4.4.0a0'] -> pillow[version='>=6.2.0']
pillow==8.3.1=py38h8e6f84c_0

Package xorg-libice conflicts for:
cairo==1.16.0=h9f066cc_1006 -> xorg-libice
xorg-libsm==1.2.3=hd9c2040_1000 -> xorg-libice=1.0
xorg-libice==1.0.10=h7f98852_0
harfbuzz==2.7.2=ha5b49bf_1 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libice
xorg-libxt==1.2.1=h7f98852_2 -> xorg-libice=1.0
cairo==1.16.0=h9f066cc_1006 -> xorg-libsm -> xorg-libice=1.0
r-base==4.0.3=ha43b4e8_3 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libice=1.0
genometools-genometools==1.6.1=py38h23571c4_2 -> cairo[version='>=1.16.0,<1.17.0a0'] -> xorg-libice=1.0
pango==1.42.4=h69149e4_5 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libice

Package perl-http-date conflicts for:
perl-libwww-perl==6.39=pl526_0 -> perl-http-date
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-http-date
perl-http-date==6.02=pl526_3
perl-http-daemon==6.01=pl526_1 -> perl-http-date
perl-http-message==6.18=pl526_0 -> perl-http-date
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-http-date
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-http-date
entrez-direct==13.9=pl5262he881be0_2 -> perl-http-date
perl-http-negotiate==6.01=pl526_3 -> perl-http-message -> perl-http-date
perl-http-cookies==6.04=pl526_0 -> perl-http-date
perl-file-listing==6.04=pl526_1 -> perl-http-date

Package pyqt conflicts for:
matplotlib==3.4.3=py38h578d9bd_0 -> pyqt
pyqt==5.12.3=py38h578d9bd_7

Package r-desc conflicts for:
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-desc
r-testthat==3.0.4=r40h03ef668_0 -> r-desc
r-pkgload==1.2.1=r40h03ef668_0 -> r-desc
r-desc==1.3.0=r40hc72bb7e_0

Package r-ps conflicts for:
r-processx==3.5.2=r40hcfec24a_0 -> r-ps[version='>=1.2.0']
r-ps==1.6.0=r40hcfec24a_0
r-testthat==3.0.4=r40h03ef668_0 -> r-processx -> r-ps[version='>=1.2.0']
r-callr==3.7.0=r40hc72bb7e_0 -> r-processx[version='>=3.4.0'] -> r-ps[version='>=1.2.0']
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-ps[version='>=1.3.4']
r-testthat==3.0.4=r40h03ef668_0 -> r-ps[version='>=1.3.4']

Package xorg-libxext conflicts for:
cairo==1.16.0=h9f066cc_1006 -> xorg-libxext
r-base==4.0.3=ha43b4e8_3 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libxext
genometools-genometools==1.6.1=py38h23571c4_2 -> xorg-libxext
xorg-libxext==1.3.4=h7f98852_1
pango==1.42.4=h69149e4_5 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libxext
harfbuzz==2.7.2=ha5b49bf_1 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libxext

Package libxkbcommon conflicts for:
pyqtwebengine==5.12.1=py38h7400c14_7 -> qt[version='>=5.12.9,<5.13.0a0'] -> libxkbcommon[version='>=0.10.0,<1.0a0|>=1.0.3,<2.0a0']
qt==5.12.9=h763d07f_1 -> libxkbcommon[version='>=1.0.3,<2.0a0']
libxkbcommon==1.0.3=he3ba5ed_0
pyqtchart==5.12=py38h7400c14_7 -> qt[version='>=5.12.9,<5.13.0a0'] -> libxkbcommon[version='>=0.10.0,<1.0a0|>=1.0.3,<2.0a0']
pyqt-impl==5.12.3=py38h7400c14_7 -> qt[version='>=5.12.9,<5.13.0a0'] -> libxkbcommon[version='>=0.10.0,<1.0a0|>=1.0.3,<2.0a0']

Package perl-params-validate conflicts for:
perl-params-validate==1.29=pl526h14c3975_1
circos==0.69.2=0 -> perl-params-validate

Package r-ellipsis conflicts for:
r-tidyr==1.1.3=r40h03ef668_0 -> r-ellipsis[version='>=0.1.0']
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-ellipsis[version='>=0.2.0']
r-dplyr==1.0.5=r40h03ef668_0 -> r-tibble[version='>=2.1.3'] -> r-ellipsis[version='>=0.2.0']
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-tibble -> r-ellipsis[version='>=0.2.0']
r-tidyselect==1.1.1=r40hc72bb7e_0 -> r-ellipsis
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-dplyr -> r-ellipsis[version='>=0.2.0']
r-tibble==3.1.3=r40hcfec24a_0 -> r-ellipsis[version='>=0.2.0']
r-dplyr==1.0.5=r40h03ef668_0 -> r-ellipsis
r-waldo==0.2.5=r40hc72bb7e_0 -> r-tibble -> r-ellipsis[version='>=0.2.0']
r-tidyr==1.1.3=r40h03ef668_0 -> r-dplyr[version='>=0.8.2'] -> r-ellipsis[version='>=0.2.0']
r-ellipsis==0.3.2=r40hcfec24a_0
r-pillar==1.6.2=r40hc72bb7e_0 -> r-ellipsis
r-rematch2==2.1.2=r40hc72bb7e_1 -> r-tibble -> r-ellipsis[version='>=0.2.0']
r-vctrs==0.3.8=r40hcfec24a_1 -> r-ellipsis[version='>=0.2.0']
r-tidyselect==1.1.1=r40hc72bb7e_0 -> r-vctrs[version='>=0.3.0'] -> r-ellipsis[version='>=0.2.0']
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-dplyr -> r-ellipsis[version='>=0.1.0']
r-tibble==3.1.3=r40hcfec24a_0 -> r-pillar[version='>=1.5.0'] -> r-ellipsis
r-testthat==3.0.4=r40h03ef668_0 -> r-ellipsis[version='>=0.2.0']
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-dplyr -> r-ellipsis[version='>=0.2.0']
r-pillar==1.6.2=r40hc72bb7e_0 -> r-vctrs[version='>=0.2.0'] -> r-ellipsis[version='>=0.2.0']

Package font-ttf-source-code-pro conflicts for:
fonts-conda-ecosystem==1=0 -> fonts-conda-forge -> font-ttf-source-code-pro
fonts-conda-forge==1=0 -> font-ttf-source-code-pro
font-ttf-source-code-pro==2.038=h77eed37_0

Package font-ttf-ubuntu conflicts for:
fonts-conda-forge==1=0 -> font-ttf-ubuntu
fonts-conda-ecosystem==1=0 -> fonts-conda-forge -> font-ttf-ubuntu
font-ttf-ubuntu==0.83=hab24e00_0

Package perl-app-cpanminus conflicts for:
perl-file-temp==0.2304=pl526_2 -> perl-app-cpanminus
perl-xml-sax==1.02=pl526_0 -> perl-file-temp -> perl-app-cpanminus
perl-time-hires==1.9760=pl526h14c3975_1 -> perl-extutils-makemaker -> perl-app-cpanminus
perl-app-cpanminus==1.7044=pl526_1
perl-carp==1.38=pl526_3 -> perl-extutils-makemaker -> perl-app-cpanminus
blast==2.11.0=pl526he19e7b1_0 -> perl-list-moreutils -> perl-app-cpanminus
circos==0.69.2=0 -> perl-list-moreutils -> perl-app-cpanminus

Package xorg-kbproto conflicts for:
xorg-libxext==1.3.4=h7f98852_1 -> xorg-libx11[version='>=1.7.0,<2.0a0'] -> xorg-kbproto
xorg-libxt==1.2.1=h7f98852_2 -> xorg-kbproto
r-base==4.0.3=ha43b4e8_3 -> xorg-libxt -> xorg-kbproto
xorg-libx11==1.7.2=h7f98852_0 -> xorg-kbproto
cairo==1.16.0=h9f066cc_1006 -> xorg-libx11 -> xorg-kbproto
xorg-kbproto==1.0.7=h7f98852_1002
xorg-libxrender==0.9.10=h7f98852_1003 -> xorg-libx11[version='>=1.7.0,<2.0a0'] -> xorg-kbproto

Package xorg-renderproto conflicts for:
xorg-libxrender==0.9.10=h7f98852_1003 -> xorg-renderproto
xorg-renderproto==0.11.1=h7f98852_1002
genometools-genometools==1.6.1=py38h23571c4_2 -> xorg-libxrender -> xorg-renderproto
cairo==1.16.0=h9f066cc_1006 -> xorg-libxrender -> xorg-renderproto

Package zstd conflicts for:
r-base==4.0.3=ha43b4e8_3 -> libtiff[version='>=4.1.0,<5.0a0'] -> zstd[version='>=1.3.7,<1.3.8.0a0|>=1.4.4,<1.5.0a0|>=1.4|>=1.4.3,<1.5.0.0a0|>=1.4.4,<1.5.0.0a0|>=1.4.5,<1.5.0a0|>=1.4.9,<1.5.0a0|>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
zstd==1.5.0=ha95c52a_0
qt==5.12.9=h763d07f_1 -> mysql-libs[version='>=8.0.22,<8.1.0.0a0'] -> zstd[version='>=1.4.5,<1.5.0a0|>=1.4.8,<1.5.0a0|>=1.4.9,<1.5.0a0|>=1.5.0,<1.6.0a0|>=1.5.1,<1.6.0a0|>=1.5.2,<1.6.0a0']
libgd==2.2.5=h6e6070c_1008 -> libtiff[version='>=4.1.0,<5.0a0'] -> zstd[version='>=1.3.7,<1.3.8.0a0|>=1.4.4,<1.5.0a0|>=1.4|>=1.4.3,<1.5.0.0a0|>=1.4.4,<1.5.0.0a0|>=1.4.5,<1.5.0a0|>=1.4.9,<1.5.0a0|>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
pillow==8.3.1=py38h8e6f84c_0 -> libtiff[version='>=4.3.0,<4.4.0a0'] -> zstd[version='>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
lcms2==2.12=hddcbb42_0 -> libtiff[version='>=4.2.0,<5.0a0'] -> zstd[version='>=1.4.5,<1.5.0a0|>=1.4.9,<1.5.0a0|>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
openjpeg==2.4.0=hb52868f_1 -> libtiff[version='>=4.2.0,<5.0a0'] -> zstd[version='>=1.4.5,<1.5.0a0|>=1.4.9,<1.5.0a0|>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
mysql-libs==8.0.25=hfa10184_2 -> zstd[version='>=1.5.0,<1.6.0a0']
libwebp==1.2.1=h3452ae3_0 -> libtiff[version='>=4.3.0,<5.0a0'] -> zstd[version='>=1.5.0,<1.6.0a0|>=1.5.2,<1.6.0a0']
libtiff==4.3.0=hf544144_1 -> zstd[version='>=1.5.0,<1.6.0a0']

Package joblib conflicts for:
scikit-learn==0.24.2=py38h1561384_1 -> joblib[version='>=0.11']
joblib==1.0.1=pyhd8ed1ab_0

Package binutils_linux-64 conflicts for:
gxx_linux-64==9.4.0=h0316aca_0 -> binutils_linux-64==2.36=hf3e587d_0
gfortran_linux-64==9.4.0=hf0ab688_0 -> binutils_linux-64==2.36=hf3e587d_0
binutils_linux-64==2.36=hf3e587d_0
gcc_linux-64==9.4.0=h391b98a_0 -> binutils_linux-64==2.36=hf3e587d_0
r-base==4.0.3=ha43b4e8_3 -> gcc_linux-64[version='>=9'] -> binutils_linux-64[version='2.34|2.34|2.34|2.34|2.35|2.35|2.35|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.36|2.39|2.38.0|2.35.1',build='h47ac705_23|h47ac705_26|h47ac705_27|hc3fd857_29|h67ddf6f_30|hf3e587d_32|hf3e587d_33|hf3e587d_4|hf3e587d_6|hf3e587d_9|h5fc0e48_11|hf3e587d_10|hf3e587d_8|hf3e587d_7|hf3e587d_5|hf3e587d_3|hf3e587d_2|hf3e587d_1|hf3e587d_0|hf3e587d_31|heab0d09_28|h47ac705_25|hc2dff05_0|h454624a_30']

Package perl-exporter-tiny conflicts for:
perl-list-moreutils==0.428=pl526_1 -> perl-exporter-tiny
perl-exporter-tiny==1.002001=pl526_0
blast==2.11.0=pl526he19e7b1_0 -> perl-list-moreutils -> perl-exporter-tiny
circos==0.69.2=0 -> perl-list-moreutils -> perl-exporter-tiny

Package perl-try-tiny conflicts for:
perl-module-implementation==0.09=pl526_2 -> perl-try-tiny
perl-libwww-perl==6.39=pl526_0 -> perl-try-tiny
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-try-tiny
perl-try-tiny==0.30=pl526_1
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-try-tiny
perl-params-validate==1.29=pl526h14c3975_1 -> perl-module-implementation -> perl-try-tiny

Package perl-http-message conflicts for:
perl-libwww-perl==6.39=pl526_0 -> perl-html-parser -> perl-http-message
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-http-message
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-http-message
perl-http-negotiate==6.01=pl526_3 -> perl-http-message
perl-http-message==6.18=pl526_0
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-http-message
perl-html-tree==5.07=pl526_1 -> perl-html-parser -> perl-http-message
entrez-direct==13.9=pl5262he881be0_2 -> perl-http-message
entrez-direct==13.9=pl5262he881be0_2 -> perl-lwp-protocol-https -> perl-http-message[version='>=6.18']
perl-http-daemon==6.01=pl526_1 -> perl-http-message
perl-http-cookies==6.04=pl526_0 -> perl-http-message

Package xorg-xextproto conflicts for:
cairo==1.16.0=h9f066cc_1006 -> xorg-libxext -> xorg-xextproto
xorg-xextproto==7.3.0=h7f98852_1002
xorg-libxext==1.3.4=h7f98852_1 -> xorg-xextproto
genometools-genometools==1.6.1=py38h23571c4_2 -> xorg-libxext -> xorg-xextproto

Package perl-list-moreutils conflicts for:
perl-list-moreutils==0.428=pl526_1
tesorter==1.3.0=py_0 -> blast -> perl-list-moreutils
blast==2.11.0=pl526he19e7b1_0 -> perl-list-moreutils
circos==0.69.2=0 -> perl-list-moreutils

Package cycler conflicts for:
matplotlib-base==3.4.3=py38hf4fb855_0 -> cycler[version='>=0.10']
cycler==0.10.0=py_2
matplotlib==3.4.3=py38h578d9bd_0 -> matplotlib-base[version='>=3.4.3,<3.4.4.0a0'] -> cycler[version='>=0.10']

Package perl-regexp-common conflicts for:
perl-regexp-common==2017060201=pl526_0
circos==0.69.2=0 -> perl-regexp-common

Package giflib conflicts for:
libgd==2.2.5=h6e6070c_1008 -> libwebp -> giflib[version='>=5.1.4,<5.2.0a0|>=5.1.7,<5.1.8.0a0|>=5.2.1,<5.3.0a0']
giflib==5.2.1=h36c2ea0_2
libwebp==1.2.1=h3452ae3_0 -> giflib[version='>=5.2.1,<5.3.0a0']

Package webencodings conflicts for:
tinycss2==1.1.0=pyhd8ed1ab_0 -> webencodings[version='>=0.4']
webencodings==0.5.1=py_1
cssselect2==0.2.1=pyh9f0ad1d_1 -> tinycss2 -> webencodings[version='>=0.4']
svglib==1.1.0=py38h578d9bd_0 -> tinycss2[version='>=0.6.0'] -> webencodings[version='>=0.4']

Package perl-io-socket-ssl conflicts for:
perl-lwp-protocol-https==6.07=pl526_4 -> perl-io-socket-ssl
perl-io-socket-ssl==2.066=pl526_0
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-io-socket-ssl
perl-libwww-perl==6.39=pl526_0 -> perl-net-http[version='>=6.18'] -> perl-io-socket-ssl
entrez-direct==13.9=pl5262he881be0_2 -> perl-io-socket-ssl
perl-net-http==6.19=pl526_0 -> perl-io-socket-ssl

Package libxslt conflicts for:
svglib==1.1.0=py38h578d9bd_0 -> lxml -> libxslt[version='>=1.1.28|>=1.1.32,<2.0a0|>=1.1.33,<2.0a0|>=1.1.35,<2.0a0|>=1.1.37,<2.0a0|>=1.1.34,<2.0a0']
libxslt==1.1.33=hf705e74_1
lxml==4.6.3=py38hf1fe3a4_0 -> libxslt[version='>=1.1.33,<2.0a0']

Package perl-encode conflicts for:
perl-http-cookies==6.04=pl526_0 -> perl-http-message -> perl-encode[version='>=3.01']
perl-www-robotrules==6.02=pl526_3 -> perl-uri -> perl-encode
perl-libwww-perl==6.39=pl526_0 -> perl-encode
perl-encode==2.88=pl526_1
perl-encode-locale==1.05=pl526_6 -> perl-encode
perl-archive-tar==2.32=pl526_0 -> perl-io-compress -> perl-encode
perl-http-message==6.18=pl526_0 -> perl-encode
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-encode
perl-http-negotiate==6.01=pl526_3 -> perl-http-message -> perl-encode[version='>=3.01']
perl-uri==1.76=pl526_0 -> perl-encode
perl-http-daemon==6.01=pl526_1 -> perl-http-message -> perl-encode[version='>=3.01']
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-encode
perl-net-http==6.19=pl526_0 -> perl-uri -> perl-encode
perl-carp==1.38=pl526_3 -> perl-extutils-makemaker -> perl-encode
perl-time-hires==1.9760=pl526h14c3975_1 -> perl-extutils-makemaker -> perl-encode
entrez-direct==13.9=pl5262he881be0_2 -> perl-http-message -> perl-encode[version='>=3.01']

Package r conflicts for:
r-gplots==3.1.1=r40hc72bb7e_0 -> r-catools -> r[version='3.2.2.|3.3.1.']
r-aplot==0.0.6=r40hc72bb7e_0 -> r-ggplot2 -> r[version='3.2.2.|3.3.1.']
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r[version='3.2.2.|3.3.1.']
r-testthat==3.0.4=r40h03ef668_0 -> r-digest -> r[version='3.2.2.|3.3.1.']
r-tibble==3.1.3=r40hcfec24a_0 -> r-magrittr -> r[version='3.2.2.|3.3.1.']
r-dplyr==1.0.5=r40h03ef668_0 -> r-magrittr[version='>=1.5'] -> r[version='3.2.2.|3.3.1.']
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-magrittr -> r[version='3.2.2.|3.3.1.']
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-magrittr -> r[version='3.2.2.|3.3.1.']
r-tidyr==1.1.3=r40h03ef668_0 -> r-magrittr -> r[version='3.2.2.|3.3.1.']
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-jsonlite -> r[version='3.2.2.|3.3.1.']
r-purrr==0.3.4=r40hcfec24a_1 -> r-magrittr[version='>=1.5'] -> r[version='3.2.2.|3.3.1.']
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-digest -> r[version='3.2.2.|3.3.1.']

Package kiwisolver conflicts for:
matplotlib==3.4.3=py38h578d9bd_0 -> matplotlib-base[version='>=3.4.3,<3.4.4.0a0'] -> kiwisolver[version='>=1.0.1']
matplotlib-base==3.4.3=py38hf4fb855_0 -> kiwisolver[version='>=1.0.1']
kiwisolver==1.3.1=py38h1fd1430_1

Package r-pillar conflicts for:
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-dplyr -> r-pillar[version='>=1.1.0|>=1.3.1|>=1.4.3|>=1.5.0|>=1.5.1']
r-tibble==3.1.3=r40hcfec24a_0 -> r-pillar[version='>=1.5.0']
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-dplyr -> r-pillar[version='>=1.1.0|>=1.3.1|>=1.4.3|>=1.5.0|>=1.5.1']
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-tibble -> r-pillar[version='>=1.1.0|>=1.3.1|>=1.4.3|>=1.5.0']
r-rematch2==2.1.2=r40hc72bb7e_1 -> r-tibble -> r-pillar[version='>=1.1.0|>=1.3.1|>=1.4.3|>=1.5.0']
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-dplyr -> r-pillar[version='>=1.5.1']
r-tidyr==1.1.3=r40h03ef668_0 -> r-dplyr[version='>=0.8.2'] -> r-pillar[version='>=1.3.1|>=1.4.3|>=1.5.0|>=1.5.1']
r-dplyr==1.0.5=r40h03ef668_0 -> r-tibble[version='>=2.1.3'] -> r-pillar[version='>=1.3.1|>=1.4.3|>=1.5.0']
r-waldo==0.2.5=r40hc72bb7e_0 -> r-tibble -> r-pillar[version='>=1.1.0|>=1.3.1|>=1.4.3|>=1.5.0']
r-pillar==1.6.2=r40hc72bb7e_0

Package r-brio conflicts for:
r-brio==1.1.2=r40hcfec24a_0
r-testthat==3.0.4=r40h03ef668_0 -> r-brio
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-brio

Package r-tibble conflicts for:
r-rematch2==2.1.2=r40hc72bb7e_1 -> r-tibble
r-dplyr==1.0.5=r40h03ef668_0 -> r-tibble[version='>=2.1.3']
r-tibble==3.1.3=r40hcfec24a_0
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-dplyr -> r-tibble[version='>=1.3.1|>=1.4.2|>=2.0.0|>=2.1.3']
r-patchwork==1.1.1=r40hc72bb7e_0 -> r-ggplot2[version='>=3.0.0'] -> r-tibble
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-tibble
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-tibble
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> bioconductor-treeio[version='>=1.14.0,<1.15.0'] -> r-tibble[version='>=1.3.1|>=1.4.2|>=2.0.0|>=2.1.3|>=2.1.1']
r-aplot==0.0.6=r40hc72bb7e_0 -> r-ggplot2 -> r-tibble
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-tibble
r-tidyr==1.1.3=r40h03ef668_0 -> r-tibble[version='>=2.1.1']
r-testthat==3.0.4=r40h03ef668_0 -> r-brio -> r-tibble[version='>=2.0|>=2.1']
r-waldo==0.2.5=r40hc72bb7e_0 -> r-tibble
r-tidyr==1.1.3=r40h03ef668_0 -> r-dplyr[version='>=0.8.2'] -> r-tibble[version='>=2.0.0|>=2.1.3']
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-dplyr -> r-tibble[version='>=1.3.1|>=1.4.2|>=2.0.0|>=2.1.3']

Package pyqt-impl conflicts for:
pyqtchart==5.12=py38h7400c14_7 -> pyqt-impl==5.12.3=py38h7400c14_7
pyqt==5.12.3=py38h578d9bd_7 -> pyqt-impl==5.12.3=py38h7400c14_7
pyqt-impl==5.12.3=py38h7400c14_7
pyqtwebengine==5.12.1=py38h7400c14_7 -> pyqt-impl==5.12.3=py38h7400c14_7
matplotlib==3.4.3=py38h578d9bd_0 -> pyqt -> pyqt-impl==5.12.3[build='py37he336c9b_6|py38h7400c14_6|py38h7400c14_7|py37he336c9b_7|py39h0fcd23e_7|py310h1f8e252_8|py38h0ffb2e6_8|py37hac37412_8|py39hde8b62d_8|py36h7ec31b9_7|py39h0fcd23e_6|py36h7ec31b9_6|py37he336c9b_5']

Package pigz conflicts for:
xopen==1.1.0=py38h578d9bd_3 -> pigz
pigz==2.6=h27826a3_0

Package nspr conflicts for:
qt==5.12.9=h763d07f_1 -> nss[version='>=3.60,<4.0a0'] -> nspr[version='>=4.30,<5.0a0|>=4.32,<5.0a0|>=4.35,<5.0a0|>=4.33,<5|>=4.33,<5.0a0']
pyqtchart==5.12=py38h7400c14_7 -> qt[version='>=5.12.9,<5.13.0a0'] -> nspr[version='>=4.28,<5.0a0|>=4.29,<5.0a0|>=4.32,<5.0a0']
nspr==4.30=h9c3ff4c_0
qt==5.12.9=h763d07f_1 -> nspr[version='>=4.29,<5.0a0']
pyqtwebengine==5.12.1=py38h7400c14_7 -> qt[version='>=5.12.9,<5.13.0a0'] -> nspr[version='>=4.28,<5.0a0|>=4.29,<5.0a0|>=4.32,<5.0a0']
pyqt-impl==5.12.3=py38h7400c14_7 -> qt[version='>=5.12.9,<5.13.0a0'] -> nspr[version='>=4.28,<5.0a0|>=4.29,<5.0a0|>=4.32,<5.0a0']
nss==3.69=hb5efdd6_0 -> nspr[version='>=4.30,<5.0a0']

Package wheel conflicts for:
python==3.8.8=hdb3f193_5 -> pip -> wheel
wheel==0.37.0=pyhd8ed1ab_1
binpacking==1.5.0=pyh6c4a22f_0 -> pip -> wheel
pip==21.2.4=pyhd8ed1ab_0 -> wheel

Package gmp conflicts for:
tesorter==1.3.0=py_0 -> blast -> gmp[version='>=6.1.2,<7.0a0']
perl-xml-parser==2.44=4 -> libgcc -> gmp[version='>=4.2']

Package r-patchwork conflicts for:
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-aplot[version='>=0.0.4'] -> r-patchwork
r-patchwork==1.1.1=r40hc72bb7e_0
r-aplot==0.0.6=r40hc72bb7e_0 -> r-patchwork

Package harfbuzz conflicts for:
r-base==4.0.3=ha43b4e8_3 -> pango[version='>=1.42.4,<1.43.0a0'] -> harfbuzz[version='>=1.7.6,<2.0a0|>=2.4.0,<3.0a0|>=2.7.2,<3.0a0']
genometools-genometools==1.6.1=py38h23571c4_2 -> pango[version='>=1.42.4,<1.43.0a0'] -> harfbuzz[version='>=1.7.6,<2.0a0|>=2.4.0,<3.0a0|>=2.7.2,<3.0a0']
pango==1.42.4=h69149e4_5 -> harfbuzz[version='>=2.7.2,<3.0a0']
harfbuzz==2.7.2=ha5b49bf_1

Package perl-lwp-mediatypes conflicts for:
perl-http-message==6.18=pl526_0 -> perl-lwp-mediatypes
perl-http-negotiate==6.01=pl526_3 -> perl-http-message -> perl-lwp-mediatypes
perl-http-cookies==6.04=pl526_0 -> perl-http-message -> perl-lwp-mediatypes
perl-libwww-perl==6.39=pl526_0 -> perl-lwp-mediatypes
entrez-direct==13.9=pl5262he881be0_2 -> perl-lwp-mediatypes
perl-http-daemon==6.01=pl526_1 -> perl-lwp-mediatypes
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-lwp-mediatypes
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-lwp-mediatypes
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-lwp-mediatypes
perl-lwp-mediatypes==6.04=pl526_0

Package r-gtable conflicts for:
r-patchwork==1.1.1=r40hc72bb7e_0 -> r-ggplot2[version='>=3.0.0'] -> r-gtable[version='>=0.1.1']
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-ggplot2[version='>=3.0.0'] -> r-gtable[version='>=0.1.1']
r-gtable==0.3.0=r40hc72bb7e_3
r-patchwork==1.1.1=r40hc72bb7e_0 -> r-gtable
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-gtable[version='>=0.1.1']
r-aplot==0.0.6=r40hc72bb7e_0 -> r-ggplot2 -> r-gtable[version='>=0.1.1']

Package python-dateutil conflicts for:
statsmodels==0.13.1=py38h6c62de6_0 -> pandas[version='>=1.0'] -> python-dateutil[version='>=2.6.1|>=2.7.3|>=2.8.1']
matplotlib-base==3.4.3=py38hf4fb855_0 -> python-dateutil[version='>=2.1']
matplotlib==3.4.3=py38h578d9bd_0 -> matplotlib-base[version='>=3.4.3,<3.4.4.0a0'] -> python-dateutil[version='>=2.1']
pandas==1.3.5=py38h43a58ef_0 -> python-dateutil[version='>=2.7.3']
python-dateutil==2.8.2=pyhd8ed1ab_0

Package libwebp conflicts for:
perl-gd==2.71=pl526he860b03_0 -> libgd[version='>=2.2.5,<2.3.0a0'] -> libwebp[version='0.5.*|>=0.5.2,<0.6.0a0|>=1.0.0,<1.1.0a0|>=1.0.2,<1.1.0a0']
libgd==2.2.5=h6e6070c_1008 -> libwebp
libwebp==1.2.1=h3452ae3_0
reportlab==3.5.68=py38hadf75a6_0 -> pillow[version='>=2.4.0'] -> libwebp[version='>=0.3.0|>=1.2.0,<1.3.0a0']
r-base==4.0.3=ha43b4e8_3 -> libtiff[version='>=4.1.0,<5.0a0'] -> libwebp
matplotlib-base==3.4.3=py38hf4fb855_0 -> pillow[version='>=6.2.0'] -> libwebp[version='>=0.3.0|>=1.2.0,<1.3.0a0']

Package r-backports conflicts for:
r-pkgload==1.2.1=r40h03ef668_0 -> r-rprojroot -> r-backports
r-tibble==3.1.3=r40hcfec24a_0 -> r-vctrs[version='>=0.3.2'] -> r-backports
r-dplyr==1.0.5=r40h03ef668_0 -> r-vctrs[version='>=0.3.2'] -> r-backports
r-backports==1.2.1=r40hcfec24a_0
r-tidyselect==1.1.1=r40hc72bb7e_0 -> r-vctrs[version='>=0.3.0'] -> r-backports
r-rprojroot==2.0.2=r40hc72bb7e_0 -> r-backports
r-pillar==1.6.2=r40hc72bb7e_0 -> r-vctrs[version='>=0.2.0'] -> r-backports
r-desc==1.3.0=r40hc72bb7e_0 -> r-rprojroot -> r-backports
r-tidyr==1.1.3=r40h03ef668_0 -> r-vctrs[version='>=0.3.0'] -> r-backports

Package r-cli conflicts for:
r-testthat==3.0.4=r40h03ef668_0 -> r-cli
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-tibble -> r-cli[version='>=1.0.1']
r-waldo==0.2.5=r40hc72bb7e_0 -> r-tibble -> r-cli[version='>=1.0.1']
r-pillar==1.6.2=r40hc72bb7e_0 -> r-lifecycle -> r-cli[version='>=3.2.0|>=3.4.0']
r-tidyselect==1.1.1=r40hc72bb7e_0 -> r-vctrs[version='>=0.3.0'] -> r-cli[version='>=3.2.0|>=3.4.0']
r-tibble==3.1.3=r40hcfec24a_0 -> r-lifecycle[version='>=0.2.0'] -> r-cli[version='>=3.2.0|>=3.4.0']
r-cli==3.0.1=r40h03ef668_1
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-tibble -> r-cli[version='>=1.0.1']
r-tidyr==1.1.3=r40h03ef668_0 -> r-lifecycle -> r-cli[version='>=1.0.1|>=3.4.0|>=3.3.0|>=3.2.0']
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-tibble -> r-cli[version='>=1.0.1']
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-cli
r-pkgload==1.2.1=r40h03ef668_0 -> r-cli
r-dplyr==1.0.5=r40h03ef668_0 -> r-lifecycle[version='>=0.2.0'] -> r-cli[version='>=1.0.1|>=3.4.0|>=3.3.0|>=3.2.0']
r-scales==1.1.1=r40hc72bb7e_0 -> r-lifecycle -> r-cli[version='>=3.4.0']
r-waldo==0.2.5=r40hc72bb7e_0 -> r-cli
r-testthat==3.0.4=r40h03ef668_0 -> r-lifecycle -> r-cli[version='>=3.3.0|>=3.4.0']
r-rematch2==2.1.2=r40hc72bb7e_1 -> r-tibble -> r-cli[version='>=1.0.1']
r-pillar==1.6.2=r40hc72bb7e_0 -> r-cli

Package perl-html-tree conflicts for:
perl-html-tree==5.07=pl526_1
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-html-tree
entrez-direct==13.9=pl5262he881be0_2 -> perl-html-tree

Package font-ttf-inconsolata conflicts for:
font-ttf-inconsolata==3.000=h77eed37_0
fonts-conda-forge==1=0 -> font-ttf-inconsolata
fonts-conda-ecosystem==1=0 -> fonts-conda-forge -> font-ttf-inconsolata

Package perl-number-format conflicts for:
circos==0.69.2=0 -> perl-statistics-basic -> perl-number-format
perl-number-format==1.75=pl526_3
perl-statistics-basic==1.6611=pl526_2 -> perl-number-format

Package r-dplyr conflicts for:
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-dplyr
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-dplyr
r-tidyr==1.1.3=r40h03ef668_0 -> r-purrr -> r-dplyr
r-dplyr==1.0.5=r40h03ef668_0
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-dplyr
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-tidyr -> r-dplyr[version='>=0.4|>=0.7.0|>=0.8.2|>=1.0.0']
r-tidyr==1.1.3=r40h03ef668_0 -> r-dplyr[version='>=0.8.2']

Package perl-xml-sax conflicts for:
perl-xml-sax==1.02=pl526_0
perl-xml-simple==2.25=pl526_1 -> perl-xml-sax
entrez-direct==13.9=pl5262he881be0_2 -> perl-xml-simple -> perl-xml-sax
perl-xml-sax-expat==0.51=pl526_3 -> perl-xml-sax

Package r-dichromat conflicts for:
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-scales[version='>=0.5.0'] -> r-dichromat
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-scales -> r-dichromat

Package perl-math-bezier conflicts for:
circos==0.69.2=0 -> perl-math-bezier
perl-math-bezier==0.01=pl526_1

Package mysql-common conflicts for:
mysql-common==8.0.25=ha770c72_2
mysql-libs==8.0.25=hfa10184_2 -> mysql-common==8.0.25=ha770c72_2
qt==5.12.9=h763d07f_1 -> mysql-libs[version='>=8.0.22,<8.1.0.0a0'] -> mysql-common[version='8.0.22|8.0.22|8.0.22|8.0.22|8.0.23|8.0.23|8.0.23|8.0.24|8.0.25|8.0.25|8.0.25|8.0.25|8.0.26|8.0.27|8.0.27|8.0.27|8.0.27|8.0.28|8.0.28|8.0.28|8.0.28|8.0.28|8.0.28|8.0.28|8.0.29|8.0.29|8.0.29|8.0.29|8.0.30|8.0.30|8.0.30|8.0.30|8.0.31',build='0|ha770c72_1|ha770c72_1|ha770c72_2|ha770c72_0|ha770c72_1|ha770c72_0|ha770c72_1|ha770c72_2|ha770c72_3|haf5c9bc_0|haf5c9bc_1|haf5c9bc_0|h26416b9_1|haf5c9bc_1|haf5c9bc_0|h26416b9_0|h26416b9_0|h26416b9_1|h26416b9_0|h26416b9_4|haf5c9bc_4|h26416b9_3|haf5c9bc_3|h26416b9_2|haf5c9bc_2|ha770c72_0|ha770c72_0|ha770c72_3|ha770c72_2|ha770c72_0|ha770c72_0|ha770c72_3|ha770c72_2']

Package r-mass conflicts for:
r-patchwork==1.1.1=r40hc72bb7e_0 -> r-ggplot2[version='>=3.0.0'] -> r-mass
r-aplot==0.0.6=r40hc72bb7e_0 -> r-ggplot2 -> r-mass
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-mass
r-mass==7.3_54=r40hcfec24a_0
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-ggplot2[version='>=3.0.0'] -> r-mass

Package pp conflicts for:
tesorter==1.3.0=py_0 -> pp
pp==1.6.4.4=py_0

Package perl-http-cookies conflicts for:
perl-http-cookies==6.04=pl526_0
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-http-cookies
entrez-direct==13.9=pl5262he881be0_2 -> perl-http-cookies
perl-libwww-perl==6.39=pl526_0 -> perl-http-cookies
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-http-cookies
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-http-cookies

Package perl-compress-raw-zlib conflicts for:
perl-libwww-perl==6.39=pl526_0 -> perl-net-http[version='>=6.18'] -> perl-compress-raw-zlib
perl-lwp-protocol-https==6.07=pl526_4 -> perl-net-http -> perl-compress-raw-zlib
perl-http-daemon==6.01=pl526_1 -> perl-http-message -> perl-compress-raw-zlib
perl-http-message==6.18=pl526_0 -> perl-compress-raw-zlib
perl-compress-raw-zlib==2.087=pl526hc9558a2_0
perl-http-cookies==6.04=pl526_0 -> perl-http-message -> perl-compress-raw-zlib
entrez-direct==13.9=pl5262he881be0_2 -> perl-http-message -> perl-compress-raw-zlib
perl-io-compress==2.087=pl526he1b5a44_0 -> perl-compress-raw-zlib[version='>=2.087']
perl-http-negotiate==6.01=pl526_3 -> perl-http-message -> perl-compress-raw-zlib
perl-archive-tar==2.32=pl526_0 -> perl-io-compress -> perl-compress-raw-zlib[version='>=2.084|>=2.087|>=2.101|>=2.103']
perl-net-http==6.19=pl526_0 -> perl-compress-raw-zlib

Package perl-file-listing conflicts for:
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-file-listing
perl-libwww-perl==6.39=pl526_0 -> perl-file-listing
perl-file-listing==6.04=pl526_1
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-file-listing

Package r-utf8 conflicts for:
r-pillar==1.6.2=r40hc72bb7e_0 -> r-utf8[version='>=1.1.0']
r-utf8==1.2.2=r40hcfec24a_0
r-tibble==3.1.3=r40hcfec24a_0 -> r-pillar[version='>=1.5.0'] -> r-utf8[version='>=1.1.0']

Package fftw conflicts for:
scikit-learn==0.24.2=py38h1561384_1 -> scipy -> fftw[version='>=3.3.9,<4.0a0']
statsmodels==0.13.1=py38h6c62de6_0 -> scipy[version='>=1.3'] -> fftw[version='>=3.3.9,<4.0a0']
patsy==0.5.2=pyhd8ed1ab_0 -> scipy -> fftw[version='>=3.3.9,<4.0a0']

Package r-callr conflicts for:
r-callr==3.7.0=r40hc72bb7e_0
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-callr[version='>=3.5.1']
r-testthat==3.0.4=r40h03ef668_0 -> r-callr[version='>=3.5.1']

Package r-praise conflicts for:
r-praise==1.0.0=r40hc72bb7e_1004
r-testthat==3.0.4=r40h03ef668_0 -> r-praise
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-praise

Package libstdcxx-devel_linux-64 conflicts for:
gxx_linux-64==9.4.0=h0316aca_0 -> gxx_impl_linux-64=9.4.0 -> libstdcxx-devel_linux-64==9.4.0[build='hd854feb_3|hd854feb_4|hd854feb_5|hd854feb_7|hd854feb_8|hd854feb_9|hd854feb_10|hd854feb_14|hd854feb_15|hd854feb_16|hd854feb_13|hd854feb_12|hd854feb_11|hd854feb_6']
gxx_impl_linux-64==9.4.0=h03d3576_8 -> libstdcxx-devel_linux-64==9.4.0=hd854feb_8
libstdcxx-devel_linux-64==9.4.0=hd854feb_8

Package gdbm conflicts for:
ltr_finder==1.07=h7d875b9_1 -> perl -> gdbm[version='>=1.18|>=1.18,<1.19.0a0']
perl-threaded==5.26.0=0 -> perl -> gdbm[version='>=1.18|>=1.18,<1.19.0a0']

Package perl-ntlm conflicts for:
perl-ntlm==1.09=pl526_4
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-ntlm
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-ntlm
perl-libwww-perl==6.39=pl526_0 -> perl-ntlm

Package xorg-libsm conflicts for:
genometools-genometools==1.6.1=py38h23571c4_2 -> xorg-libsm
pango==1.42.4=h69149e4_5 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libsm
cairo==1.16.0=h9f066cc_1006 -> xorg-libsm
r-base==4.0.3=ha43b4e8_3 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libsm=1.2
harfbuzz==2.7.2=ha5b49bf_1 -> cairo[version='>=1.16.0,<2.0.0a0'] -> xorg-libsm
xorg-libxt==1.2.1=h7f98852_2 -> xorg-libsm=1.2
xorg-libsm==1.2.3=hd9c2040_1000

Package perl-font-ttf conflicts for:
circos==0.69.2=0 -> perl-font-ttf
perl-font-ttf==1.06=pl526_0

Package perl-io-string conflicts for:
circos==0.69.2=0 -> perl-font-ttf -> perl-io-string
perl-font-ttf==1.06=pl526_0 -> perl-io-string
perl-io-string==1.08=pl526_3

Package isa-l conflicts for:
xopen==1.1.0=py38h578d9bd_3 -> isa-l[version='>=2.30']
xopen==1.1.0=py38h578d9bd_3 -> python-isal -> isa-l[version='>=2.26']
python-isal==0.11.0=py38h497a2fe_0 -> isa-l[version='>=2.26']
isa-l==2.30.0=ha770c72_4

Package patsy conflicts for:
statsmodels==0.13.1=py38h6c62de6_0 -> patsy[version='>=0.5.2']
patsy==0.5.2=pyhd8ed1ab_0

Package jemalloc conflicts for:
jemalloc==4.5.0=0
jellyfish==2.2.10=h6bb024c_1 -> jemalloc

Package blast conflicts for:
tesorter==1.3.0=py_0 -> blast
blast==2.11.0=pl526he19e7b1_0

Package r-rcolorbrewer conflicts for:
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-scales[version='>=0.5.0'] -> r-rcolorbrewer
r-rcolorbrewer==1.1_2=r40h785f33e_1003
r-scales==1.1.1=r40hc72bb7e_0 -> r-rcolorbrewer
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-scales -> r-rcolorbrewer

Package reportlab conflicts for:
svglib==1.1.0=py38h578d9bd_0 -> reportlab
tesorter==1.3.0=py_0 -> biopython -> reportlab
reportlab==3.5.68=py38hadf75a6_0

Package r-rstudioapi conflicts for:
r-rstudioapi==0.13=r40hc72bb7e_0
r-pkgload==1.2.1=r40h03ef668_0 -> r-rstudioapi
r-testthat==3.0.4=r40h03ef668_0 -> r-pkgload -> r-rstudioapi

Package k8 conflicts for:
minimap2==2.22=h5bf99c6_0 -> k8
k8==0.2.5=h9a82719_1

Package r-processx conflicts for:
r-testthat==3.0.4=r40h03ef668_0 -> r-processx
r-testthat==3.0.4=r40h03ef668_0 -> r-callr[version='>=3.5.1'] -> r-processx[version='>=3.4.0']
r-callr==3.7.0=r40hc72bb7e_0 -> r-processx[version='>=3.4.0']
r-processx==3.5.2=r40hcfec24a_0
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-processx

Package perl-math-vecstat conflicts for:
circos==0.69.2=0 -> perl-math-vecstat
perl-math-vecstat==0.08=pl526_1

Package r-pkgload conflicts for:
r-pkgload==1.2.1=r40h03ef668_0
r-testthat==3.0.4=r40h03ef668_0 -> r-pkgload
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-pkgload

Package perl-digest-perl-md5 conflicts for:
circos==0.69.2=0 -> perl-digest-perl-md5
perl-digest-perl-md5==1.9=pl526_1

Package pandas conflicts for:
statsmodels==0.13.1=py38h6c62de6_0 -> pandas[version='>=1.0']
pandas==1.3.5=py38h43a58ef_0

Package perl-file-spec conflicts for:
perl-http-daemon==6.01=pl526_1 -> perl-http-message -> perl-file-spec
perl-http-negotiate==6.01=pl526_3 -> perl-http-message -> perl-file-spec
perl-http-cookies==6.04=pl526_0 -> perl-http-message -> perl-file-spec
entrez-direct==13.9=pl5262he881be0_2 -> perl-http-message -> perl-file-spec

Package perl-file-temp conflicts for:
perl-xml-simple==2.25=pl526_1 -> perl-xml-sax -> perl-file-temp
perl-file-temp==0.2304=pl526_2
perl-xml-sax==1.02=pl526_0 -> perl-file-temp
perl-xml-sax-expat==0.51=pl526_3 -> perl-xml-sax -> perl-file-temp

Package perl-http-daemon conflicts for:
perl-xml-parser==2.44=4 -> perl-libwww-perl -> perl-http-daemon
perl-http-daemon==6.01=pl526_1
perl-libwww-perl==6.39=pl526_0 -> perl-http-daemon
perl-lwp-protocol-https==6.07=pl526_4 -> perl-libwww-perl -> perl-http-daemon

Package perl-xml-sax-expat conflicts for:
perl-xml-simple==2.25=pl526_1 -> perl-xml-sax-expat
entrez-direct==13.9=pl5262he881be0_2 -> perl-xml-simple -> perl-xml-sax-expat
perl-xml-sax-expat==0.51=pl526_3

Package r-waldo conflicts for:
r-waldo==0.2.5=r40hc72bb7e_0
r-isoband==0.2.5=r40h03ef668_0 -> r-testthat -> r-waldo[version='>=0.2.1']
r-testthat==3.0.4=r40h03ef668_0 -> r-waldo[version='>=0.2.1']

Package biopython conflicts for:
tesorter==1.3.0=py_0 -> biopython
biopython==1.79=py38h497a2fe_0

Package matplotlib-base conflicts for:
matplotlib==3.4.3=py38h578d9bd_0 -> matplotlib-base[version='>=3.4.3,<3.4.4.0a0']
matplotlib-base==3.4.3=py38hf4fb855_0

Package libev conflicts for:
libcurl==7.76.1=hc4aaa36_1 -> libnghttp2[version='>=1.43.0,<2.0a0'] -> libev[version='>=4.11|>=4.33,<4.34.0a0']
libev==4.33=h516909a_1
libnghttp2==1.43.0=h812cca2_0 -> libev[version='>=4.11|>=4.33,<4.34.0a0']

Package openjpeg conflicts for:
matplotlib-base==3.4.3=py38hf4fb855_0 -> pillow[version='>=6.2.0'] -> openjpeg[version='>=2.3.0,<3.0a0|>=2.4.0,<3.0.0a0|>=2.5.0,<2.6.0a0|>=2.5.0,<3.0a0|>=2.4.0,<3.0a0']
pillow==8.3.1=py38h8e6f84c_0 -> openjpeg[version='>=2.4.0,<3.0.0a0']
openjpeg==2.4.0=hb52868f_1
reportlab==3.5.68=py38hadf75a6_0 -> pillow[version='>=2.4.0'] -> openjpeg[version='>=2.3.0,<3.0a0|>=2.4.0,<3.0.0a0|>=2.5.0,<2.6.0a0|>=2.5.0,<3.0a0|>=2.4.0,<3.0a0']

Package olefile conflicts for:
matplotlib-base==3.4.3=py38hf4fb855_0 -> pillow[version='>=6.2.0'] -> olefile
olefile==0.46=pyh9f0ad1d_1
pillow==8.3.1=py38h8e6f84c_0 -> olefile
reportlab==3.5.68=py38hadf75a6_0 -> pillow[version='>=2.4.0'] -> olefile

Package tornado conflicts for:
matplotlib==3.4.3=py38h578d9bd_0 -> matplotlib-base[version='>=3.4.3,<3.4.4.0a0'] -> tornado
tornado==6.1=py38h497a2fe_1
matplotlib-base==3.4.3=py38hf4fb855_0 -> tornado

Package perl-html-tagset conflicts for:
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct -> perl-html-tagset
entrez-direct==13.9=pl5262he881be0_2 -> perl-html-tagset
perl-html-tagset==3.20=pl526_3
perl-html-tree==5.07=pl526_1 -> perl-html-tagset
perl-html-parser==3.72=pl526h6bb024c_5 -> perl-html-tagset
perl-libwww-perl==6.39=pl526_0 -> perl-html-parser -> perl-html-tagset

Package entrez-direct conflicts for:
tesorter==1.3.0=py_0 -> blast -> entrez-direct
blast==2.11.0=pl526he19e7b1_0 -> entrez-direct
entrez-direct==13.9=pl5262he881be0_2

Package perl-module-implementation conflicts for:
perl-params-validate==1.29=pl526h14c3975_1 -> perl-module-implementation
circos==0.69.2=0 -> perl-params-validate -> perl-module-implementation
perl-module-implementation==0.09=pl526_2

Package r-munsell conflicts for:
r-ggplot2==3.3.5=r40hc72bb7e_0 -> r-scales[version='>=0.5.0'] -> r-munsell[version='>=0.2|>=0.5']
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-scales -> r-munsell[version='>=0.2|>=0.5']
r-munsell==0.5.0=r40hc72bb7e_1003
r-scales==1.1.1=r40hc72bb7e_0 -> r-munsell[version='>=0.5']

Package libimagequant conflicts for:
matplotlib-base==3.4.3=py38hf4fb855_0 -> pillow[version='>=6.2.0'] -> libimagequant[version='>=2.17.0,<2.18.0a0']
reportlab==3.5.68=py38hadf75a6_0 -> pillow[version='>=2.4.0'] -> libimagequant[version='>=2.17.0,<2.18.0a0']

Package python-isal conflicts for:
python-isal==0.11.0=py38h497a2fe_0
xopen==1.1.0=py38h578d9bd_3 -> python-isal

Package perl-socket conflicts for:
perl-lwp-protocol-https==6.07=pl526_4 -> perl-test-requiresinternet -> perl-socket
perl-socket==2.027=pl526_1
perl-test-requiresinternet==0.05=pl526_0 -> perl-socket
perl-libwww-perl==6.39=pl526_0 -> perl-http-daemon -> perl-socket

Package perl-types-serialiser conflicts for:
perl-types-serialiser==1.0=pl526_2
perl-json-xs==2.34=pl526h6bb024c_3 -> perl-types-serialiser
perl-json==4.02=pl526_0 -> perl-json-xs[version='<3'] -> perl-types-serialiser

Package font-ttf-dejavu-sans-mono conflicts for:
font-ttf-dejavu-sans-mono==2.37=hab24e00_0
fonts-conda-forge==1=0 -> font-ttf-dejavu-sans-mono
fonts-conda-ecosystem==1=0 -> fonts-conda-forge -> font-ttf-dejavu-sans-mono

Package perl-math-round conflicts for:
circos==0.69.2=0 -> perl-math-round
perl-math-round==0.07=pl526_1

Package r-bh conflicts for:
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-dplyr -> r-bh[version='>=1.58.0_1']
r-tidyr==1.1.3=r40h03ef668_0 -> r-dplyr[version='>=0.8.2'] -> r-bh
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-dplyr -> r-bh[version='>=1.58.0_1']
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-dplyr -> r-bh[version='>=1.58.0_1']

Package libnghttp2 conflicts for:
libcurl==7.76.1=hc4aaa36_1 -> libnghttp2[version='>=1.43.0,<2.0a0']
r-base==4.0.3=ha43b4e8_3 -> libcurl[version='>=7.71.1,<8.0a0'] -> libnghttp2[version='>=1.41.0,<2.0a0|>=1.43.0,<2.0a0|>=1.47.0,<2.0a0|>=1.46.0,<2.0a0']
curl==7.76.1=h979ede3_1 -> libcurl==7.76.1=hc4aaa36_1 -> libnghttp2[version='>=1.43.0,<2.0a0']
libnghttp2==1.43.0=h812cca2_0

Package future conflicts for:
binpacking==1.5.0=pyh6c4a22f_0 -> future
future==0.18.2=py38h578d9bd_3

Package r-tidytree conflicts for:
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-tidytree[version='>=0.2.6']
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-tidytree[version='>=0.3.0']
r-tidytree==0.3.4=r40hc72bb7e_0
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> bioconductor-treeio[version='>=1.14.0,<1.15.0'] -> r-tidytree[version='>=0.3.0']

Package c-ares conflicts for:
libnghttp2==1.43.0=h812cca2_0 -> c-ares[version='>=1.17.1,<2.0a0|>=1.7.5']
libcurl==7.76.1=hc4aaa36_1 -> libnghttp2[version='>=1.43.0,<2.0a0'] -> c-ares[version='>=1.17.1,<2.0a0|>=1.17.2,<2.0a0|>=1.18.1,<2.0a0|>=1.7.5']
c-ares==1.17.2=h7f98852_0

Package r-kernsmooth conflicts for:
r-gplots==3.1.1=r40hc72bb7e_0 -> r-kernsmooth
r-kernsmooth==2.23_20=r40h742201e_0

Package r-ape conflicts for:
bioconductor-treeio==1.14.3=r40hdfd78af_0 -> r-ape
r-ape==5.5=r40h306847c_0
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-ape
r-tidytree==0.3.4=r40hc72bb7e_0 -> r-ape

Package r-catools conflicts for:
r-gplots==3.1.1=r40hc72bb7e_0 -> r-catools
r-catools==1.18.2=r40h03ef668_0

Package perl-autoloader conflicts for:
circos==0.69.2=0 -> perl-clone -> perl-autoloader
perl-autoloader==5.74=pl526_2
perl-clone==0.42=pl526h516909a_0 -> perl-autoloader

Package fonts-conda-forge conflicts for:
fonts-conda-ecosystem==1=0 -> fonts-conda-forge
fonts-conda-forge==1=0

Package glib-tools conflicts for:
dbus==1.13.6=h48d8840_2 -> glib -> glib-tools[version='2.66.4|2.66.4|2.66.4|2.66.4|2.66.5|2.66.5|2.66.5|2.66.5|2.66.6|2.66.6|2.66.6|2.66.6|2.66.6|2.66.7|2.66.7|2.68.0|2.68.0|2.68.1|2.68.2|2.68.2|2.68.2|2.68.3|2.68.4|2.68.4|2.70.0|2.70.0|2.70.1|2.70.2|2.70.2|2.70.2|2.70.2|2.70.2|2.72.1|2.74.0|2.74.1',build='hc4f0c31_2|h709712a_2|hcd2ae1e_2|hcd2ae1e_2|h709712a_2|hc4f0c31_2|ha03b18c_2|h9c3ff4c_3|h9c3ff4c_2|h9c3ff4c_0|h9c3ff4c_0|h780b84a_2|h780b84a_3|h6239696_0|h6239696_0|h6239696_1|h6239696_0|h780b84a_4|h780b84a_1|h780b84a_0|h780b84a_0|h780b84a_1|h780b84a_0|h9c3ff4c_1|h9c3ff4c_1|h9c3ff4c_0|h9c3ff4c_0|h9c3ff4c_2|h9c3ff4c_1|h9c3ff4c_1|h9c3ff4c_0|ha03b18c_2|hc4f0c31_2|hcd2ae1e_2|h709712a_2|ha03b18c_2']
glib-tools==2.68.4=h9c3ff4c_0
gst-plugins-base==1.14.5=h0935bb2_2 -> glib[version='>=2.58.3,<3.0a0'] -> glib-tools[version='2.66.4|2.66.4|2.66.4|2.66.4|2.66.5|2.66.5|2.66.5|2.66.5|2.66.6|2.66.6|2.66.6|2.66.6|2.66.6|2.66.7|2.66.7|2.68.0|2.68.0|2.68.1|2.68.2|2.68.2|2.68.2|2.68.3|2.68.4|2.68.4|2.70.0|2.70.0|2.70.1|2.70.2|2.70.2|2.70.2|2.70.2|2.70.2|2.72.1|2.74.0|2.74.1',build='hc4f0c31_2|h709712a_2|hcd2ae1e_2|hcd2ae1e_2|h709712a_2|hc4f0c31_2|ha03b18c_2|h9c3ff4c_3|h9c3ff4c_2|h9c3ff4c_0|h9c3ff4c_0|h780b84a_2|h780b84a_3|h6239696_0|h6239696_0|h6239696_1|h6239696_0|h780b84a_4|h780b84a_1|h780b84a_0|h780b84a_0|h780b84a_1|h780b84a_0|h9c3ff4c_1|h9c3ff4c_1|h9c3ff4c_0|h9c3ff4c_0|h9c3ff4c_2|h9c3ff4c_1|h9c3ff4c_1|h9c3ff4c_0|ha03b18c_2|hc4f0c31_2|hcd2ae1e_2|h709712a_2|ha03b18c_2']
glib==2.68.4=h9c3ff4c_0 -> glib-tools==2.68.4=h9c3ff4c_0

Package lxml conflicts for:
lxml==4.6.3=py38hf1fe3a4_0
svglib==1.1.0=py38h578d9bd_0 -> lxml

Package r-bitops conflicts for:
r-bitops==1.0_7=r40hcfec24a_0
r-catools==1.18.2=r40h03ef668_0 -> r-bitops
r-gplots==3.1.1=r40hc72bb7e_0 -> r-catools -> r-bitops

Package dill conflicts for:
dill==0.3.4=pyhd8ed1ab_0
multiprocess==0.70.12.2=py38h497a2fe_0 -> dill[version='>=0.2.5']

Package lz4-c conflicts for:
libtiff==4.3.0=hf544144_1 -> zstd[version='>=1.5.0,<1.6.0a0'] -> lz4-c[version='>=1.9.3,<1.10.0a0|>=1.9.3,<1.9.4.0a0']
lz4-c==1.9.3=h9c3ff4c_1
mysql-libs==8.0.25=hfa10184_2 -> zstd[version='>=1.5.0,<1.6.0a0'] -> lz4-c[version='>=1.9.3,<1.10.0a0|>=1.9.3,<1.9.4.0a0']
zstd==1.5.0=ha95c52a_0 -> lz4-c[version='>=1.9.3,<1.9.4.0a0']

Package perl-io-zlib conflicts for:
blast==2.11.0=pl526he19e7b1_0 -> perl-archive-tar -> perl-io-zlib
perl-io-zlib==1.10=pl526_2
perl-archive-tar==2.32=pl526_0 -> perl-io-zlib

Package r-biocmanager conflicts for:
r-rvcheck==0.1.8=r40hc72bb7e_1 -> r-biocmanager
r-biocmanager==1.30.16=r40hc72bb7e_0
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-rvcheck -> r-biocmanager

Package r-rvcheck conflicts for:
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> r-rvcheck
r-rvcheck==0.1.8=r40hc72bb7e_1

Package r-diffobj conflicts for:
r-testthat==3.0.4=r40h03ef668_0 -> r-waldo[version='>=0.2.1'] -> r-diffobj[version='>=0.3.4']
r-diffobj==0.3.4=r40hcfec24a_0
r-waldo==0.2.5=r40hc72bb7e_0 -> r-diffobj

Package perl-set-intspan conflicts for:
perl-set-intspan==1.19=pl526_1
circos==0.69.2=0 -> perl-set-intspan

Package bioconductor-treeio conflicts for:
bioconductor-treeio==1.14.3=r40hdfd78af_0
bioconductor-ggtree==2.4.1=r40hdfd78af_0 -> bioconductor-treeio[version='>=1.14.0,<1.15.0']The following specifications were found to be incompatible with your system:

  • feature:/linux-64::__glibc==2.17=0
  • feature:|@/linux-64::__glibc==2.17=0
  • biopython==1.79=py38h497a2fe_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
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  • reportlab==3.5.68=py38hadf75a6_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • scikit-learn==0.24.2=py38h1561384_1 -> libgcc-ng[version='>=9.4.0'] -> __glibc[version='>=2.17']
  • scipy==1.7.1=py38h56a6a73_0 -> libgcc-ng[version='>=9.4.0'] -> __glibc[version='>=2.17']
  • sed==4.8=he412f7d_0 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • sqlite==3.36.0=h9cd32fc_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • statsmodels==0.13.1=py38h6c62de6_0 -> libgcc-ng[version='>=9.4.0'] -> __glibc[version='>=2.17']
  • tk==8.6.11=h21135ba_0 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • tktable==2.10=hb7b940f_3 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • tornado==6.1=py38h497a2fe_1 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • trimal==1.4.1=h7d875b9_5 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • unimap==0.1=h5bf99c6_1 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-kbproto==1.0.7=h7f98852_1002 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libice==1.0.10=h7f98852_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libsm==1.2.3=hd9c2040_1000 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libx11==1.7.2=h7f98852_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libxau==1.0.9=h7f98852_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libxdmcp==1.1.3=h7f98852_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libxext==1.3.4=h7f98852_1 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libxrender==0.9.10=h7f98852_1003 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-libxt==1.2.1=h7f98852_2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-renderproto==0.11.1=h7f98852_1002 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-xextproto==7.3.0=h7f98852_1002 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xorg-xproto==7.0.31=h7f98852_1007 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  • xz==5.2.5=h516909a_1 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • zlib==1.2.11=h516909a_1010 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  • zstd==1.5.0=ha95c52a_0 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.17

awesomedeer commented

@zhangrengang Above is the error log

zhangrengang commented

Can you try to install packages one by one like follows？

conda create -n SubPhaser

conda activate SubPhaser

# R
conda install r-base=4.0.3
conda install bioconductor-ggtree=2.4.1
conda install r-gplots=3.1.1

# python
conda install python=3.8.8

conda install multiprocess xopen scipy fisher numpy psutil scikit-learn matplotlib reportlab biopython binpacking svglib

conda install genometools-genometools

conda install minimap2 unimap

conda install ltr_finder tesorter circos mafft trimal iqtree=1.6.12 newick_utils fasttree

conda install pigz xopen=1.1.0    # 0.7 bug with f.read(0) (biopython 1.79)
conda install jellyfish

conda install perl-gd=2.71     # 2.6x bug: uncompatible with libwebp.so.7
conda install circos=0.69.2    # lastest 0.69.8 bug with svg colors
conda install r-dplyr=1.0.5    # lastest 1.0.7 bug with ggtree 2.4.1

# add with feedback below
conda install statsmodels

It seems some issues in your conda, as you can install python3.8. Can this yaml (https://github.com/oushujun/EDTA/blob/master/EDTA.yml) be installed in your conda?

awesomedeer commented

I will try both. I am really appreciate your fast responses!!

awesomedeer commented

Installing packages one by one really works for my case
just need one more package
conda install statsmodels
Thanks again! @zhangrengang