zhangrengang/SubPhaser

Issues

• 同源染色体组

  #39 opened 2 months ago by jinl-1
  4

• OSError: [Errno 12] Cannot allocate memory

  #38 opened 3 months ago by emircankaaya
  8

• FileNotFoundError: [Errno 2] No such file or directory: 'sg.config''

  #37 opened 3 months ago by emircankaaya
  0

• OSError: /usr/lib/libdrmaa.so.1.0: cannot open shared object file: No such file or directory

  #36 opened 4 months ago by emircankaaya
  1

• OSError: [Errno 12] Cannot allocate memory

  #35 opened 4 months ago by GLking123
  2

• 两套单倍型分配不平均

  #34 opened 4 months ago by 1203450402
  2

• Suggestion for specific settings to improve subphasing

  #32 opened 6 months ago by dabitz
  6

• kmer 13 or less gives a lot of broken pipe errors

  #33 opened 6 months ago by shreena-pradhan
  5

• Getting location of subgenome specific TEs

  #31 opened 6 months ago by EmilianoMora
  2

• Autopolyploid config file

  #12 opened 8 months ago by awesomedeer
  1

• 亚基因组分析

  #30 opened 9 months ago by zhdang
  2

• cannot allocate memory

  #29 opened 10 months ago by dabitz
  13

• ValueError: 0 kmer with fold > 2. Please reset the filter options.

  #28 opened a year ago by z626093820
  1

• ValueError: All singletons are not allowed

  #27 opened a year ago by z626093820
  1

• No differential kmers

  #26 opened a year ago by xychen233
  2

• Singularity container fails if environmental variable `R_LIBS_USER` is set

  #25 opened a year ago by taprs
  2

• `TEsorter` cannot find `rexdb` in Singularity container

  #24 opened a year ago by taprs
  3

• sg.config configuration (The homology of the de novo assembled genome is not known)

  #4 opened 3 years ago by hushaoqiang
  24

• Unbalanced of chromosomes number and differential kmers number among subgenomes

  #23 opened a year ago by xingjianfeng100
  1

• matplotlib raise RuntimeError ('Invalid DISPLAY variable')

  #22 opened a year ago by xingjianfeng100
  2

• Only one pair of homologous chromosomes were not phased

  #21 opened a year ago by apple-orange-banana
  5

• Invalid specifier: '>=3.6:'

  #20 opened a year ago by kfuku52
  1

• Changing mutation rate

  #19 opened a year ago by cmtom
  1

• The output subgenomes are not paired

  #18 opened 2 years ago by ZhaoHang-bio
  4

• Failed to install SubPhaser

  #16 opened 2 years ago by Galaxy-228
  9

• ModuleNotFoundError: No module named 'TEsorter'

  #17 opened 2 years ago by dandy3745
  4

• Can't install SubPhaser: : Found conflicts! Looking for incompatible packages.

  #10 opened 2 years ago by awesomedeer
  9

• IndexError: cannot do a non-empty take from an empty axes.

  #15 opened 2 years ago by kfuku52
  10

• Error in os.link(figfile, dstfig)

  #14 opened 2 years ago by kfuku52
  3

• Arabidopsis_suecica_LTR.inner.fa.cls.tsv not found

  #13 opened 2 years ago by kfuku52
  11

• Configuration file

  #11 opened 2 years ago by yliasolom
  3

• Too few markers

  #9 opened 2 years ago by smallfishcui
  7

• 三倍体基因组

  #8 opened 2 years ago by liufuyan2016
  1

• IndexError: index -1 is out of bounds for axis 0 with size 0

  #7 opened 2 years ago by yilunhuangyue
  7

• ValueError: n_components=3 must be between 0 and min

  #6 opened 2 years ago by YuChrming
  3

• Division by zero when trying to build trees?

  #5 opened 3 years ago by mrmrwinter
  12

• Used for contig-level assembly

  #2 opened 3 years ago by yilunhuangyue
  1

• Installation problem

  #3 opened 3 years ago by yichenyiyi
  1

• Is there a limitation on chromosome counts?

  #1 opened 3 years ago by licheng0921
  1