zhanxiangzong's Stars
ollama/ollama
Get up and running with Llama 3.2, Mistral, Gemma 2, and other large language models.
nomic-ai/gpt4all
GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.
danielecook/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Peldom/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
pytorch-labs/attention-gym
Helpful tools and examples for working with flex-attention
Boyle-Lab/Blacklist
Application for making ENCODE Blacklists
gpertea/gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
ConesaLab/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
citiususc/veryfasttree
Efficient phylogenetic tree inference for massive taxonomic datasets
ogotoh/spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
immunogenomics/SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
suinleelab/contrastiveVI
JinmiaoChenLab/SpatialGlue
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
minmarg/gtalign_alpha
GTalign, HPC protein structure alignment, superposition and search (alpha release)
yanyew/SynGAP
baku4/sigalign
A Similarity-Guided Alignment Algorithm
FunctionLab/tapioca
a framework for predicting global protein-protein interaction networks from dynamic mass spec data
jmsong2/GenomeSyn
We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.
zhouhufeng/FAVORannotator
simon19891216/CentIER
huangwenze/lncHOME_analysis
lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locations and patterns of RNA binding protein (RBP) binding sites.
schwartzlab-methods/too-many-cells-interactive
Interactive TooManyCells Trees
xgrau/possvm-orthology
Possvm: find clusters of orthologs in phylogenies using species overlap & MCL
legumeinfo/pandagma
Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
FuhaiLiAiLab/mosGraphFlow
Multi-Scale Multi-Hop Flow for Interpreting Mechanism of Signaling
genomicepidemiology/SpanSeq
Ahituv-lab/mprabase
EUCANCan/variant-callers
Scripts and containers to run the variant callers originally used in ONCOLINER
plantformatics/maize_282_diversity_scATAC
zidongzh/CREMA
Control of Regulation Extracted from Multiomic Assays