/Isoplexis_Data_Analysis

Primary LanguagePython

Isoplexis Data Analysis

Suzette Palmer (Zhan and Koh labs)

Clone Isoplexis Github Repository

git clone https://github.com/suziepalmer10/Isoplexis_Data_Analysis.git

Installation

  1. Create a virtual environment:
  • On Biohpc:
module add python/3.8.x-anaconda
python -V
conda create -n isoplexis python=3.8.8 ipykernel
conda activate isoplexis
  • On Local System (Mac/Linux)
python3 -m venv isoplexis
  1. Activate virtual environment
  • On Biohpc:
module add python/3.8.x-anaconda
conda activate isoplexis
  • On Local System (Mac/Linux)
source isoplexis/bin/activate
  1. Update pip and install required libraries
python -m pip install --upgrade pip
python -m pip install -r requirements.txt
  1. Start Isoplexis Data Analysis web server
python isoplexis.py