MicrobiotaProcess: an package for analysis, visualization and biomarker discovery of microbiome
MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It supports calculating alpha index and provides functions to visualize rarefaction curves. Moreover, it also supports visualizing the abundance of taxonomy of samples. And It also provides functions to perform the PCA, PCoA and hierarchical cluster analysis. In addition, MicrobiotaProcess also provides a method for the biomarker discovery of metagenome or other datasets.
✍️ Authors
Shuangbin Xu and Guangchuang Yu
School of Basic Medical Sciences, Southern Medical University
⏬ Installation
the development version from github:
if (!requireNamespace("devtools", quietly=TRUE))
install.packages("devtools")
devtools::install_github("xiangpin/MicrobiotaProcess")💖 Contributing
We welcome any contributions! By participating in this project you agree to bide by the terms outlined in the Contributor Code of Conduct.