/draw_fasttq

读取fastq文件任意行的read,并且统计质量值的分布情况

Primary LanguagePython

draw_fasttq

Count the mass scores in fasttq files and draw statistical graphs

Quickstart

Dependencies

  • python3
  • sample fastq files

Build

Execute in the project root directory

python -r ./requirements.txt
python main.py

conf.yml

  • fastq_file: The name of the file to read
  • result: Generated file suffix
  • read_line: The interval to be read, the two-dimensional array, each element [0], the element [1] represents the start and end of the read, and the left closes the right open interval.
  • title_name: Title name
  • x_name: Abscissa name
  • y_name: Ordinate name
  • ddof: True means sample variance, sample standard deviation, false means population variance, population standard deviation

result

0-100

0-100-result

1000-1100-result

1000-1100-result

10000-10100-result

1000-1100-result