Pinned Repositories
16S_qiime_wangyingnan
rawdata2visaulaization
American-Gut
American Gut open-access data and IPython notebooks
amplicon
Statistics and visualization for amplicon data
amplicon_sequencing_pipeline
Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
antigen.garnish
Ensemble Antigen Prediction and Quality Analysis from DNA Variants and Proteins in R
GSCALite
GSCALite: Gene set for cancer analysis
MetagenomeCourse2019
Course material for the metagenomics course
surpi
SURPI
zhaoxia413's Repositories
zhaoxia413/amplicon
Statistics and visualization for amplicon data
zhaoxia413/circlator
A tool to circularize genome assemblies
zhaoxia413/Diet_microbiome
zhaoxia413/DIO-R_microbiome
zhaoxia413/ESCC_microbiome
zhaoxia413/fastq-pair
Match up paired end fastq files quickly and efficiently.
zhaoxia413/Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
zhaoxia413/JAMS_BW
Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)
zhaoxia413/jekyll-uno-timeline
A Jekyll Theme, based on the Uno-Theme with some adjustments.
zhaoxia413/lefse
zhaoxia413/matplotlib
matplotlib: plotting with Python
zhaoxia413/Metagenome_ICI
zhaoxia413/Microbiome-1
Microbiome research
zhaoxia413/MicrobiomeStatPlot
Interpretation and visualization of microbiome charts
zhaoxia413/microbiotapd1melanoma2021
zhaoxia413/MITAscore
The MITAscore algorithm was employed to compute scores for gene signatures associated with human anti-microbial responses, anti-tumor responses, and immunotherapy response.
zhaoxia413/MLRepo
zhaoxia413/MultiOmics4CRC
zhaoxia413/neatseq-flow
A Lightweight Software for Efficient Execution of High Throughput Sequencing Workflows
zhaoxia413/nf_TUMA
Tumor microbiome analysis
zhaoxia413/panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
zhaoxia413/pgcgap
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
zhaoxia413/pyani
Application and Python module for average nucleotide identity analyses of microbes.
zhaoxia413/rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
zhaoxia413/scRNAseq_PTC
zhaoxia413/survminer
Survival Analysis and Visualization
zhaoxia413/tidyMicro
tidyMicro GitHup Repository
zhaoxia413/Virulence_Factor_Characterization
Virulence Factor Characterization in Metagenomes
zhaoxia413/VitC_microbiome
zhaoxia413/zhaoxia413.github.io
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