/pymol-vis

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Primary LanguagePythonMIT LicenseMIT

This is a pymol extension to color structures from the AlphaFold Protein Structure Database by pLDDT.

  1. Load extension into pymol. In the pymol command prompt:
run https://raw.githubusercontent.com/JinyuanSun/pymol-vis/master/coloraf.py

Step 1 Screenshot

  1. Invoke the extension in the pymol command prompt as so:
coloraf model_name
bg_color white
set spec_reflect, 0
set ray_trace_mode, 0

Step 2 Screenshot