Pinned Repositories
allbiotc2
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
Antihypertensive-med
Repository containing the code for the paper: "Investigating the potential effects of antihypertensive medication on psychiatric disorders: a mendelian randomisation study"
Cytoplasmic_mutations_induced_by_gamma_rays_in_rice
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
gatk4-mitochondria-pipeline
This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
gnomad-mitochondria
Heritable_Mutations_Induced_by_Ion_Beams_in_Rice
machine_learning_derivation
notes of machine learning algorithm derivation
MosaicForecast
A mosaic detecting software based on phasing and random forest
SVision
Detecting genome structural variants with deep learning in single molecule sequencing
zhengyunchao's Repositories
zhengyunchao/SVision
Detecting genome structural variants with deep learning in single molecule sequencing
zhengyunchao/allbiotc2
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
zhengyunchao/Antihypertensive-med
Repository containing the code for the paper: "Investigating the potential effects of antihypertensive medication on psychiatric disorders: a mendelian randomisation study"
zhengyunchao/Cytoplasmic_mutations_induced_by_gamma_rays_in_rice
zhengyunchao/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
zhengyunchao/gatk4-mitochondria-pipeline
This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
zhengyunchao/gnomad-mitochondria
zhengyunchao/Heritable_Mutations_Induced_by_Ion_Beams_in_Rice
zhengyunchao/machine_learning_derivation
notes of machine learning algorithm derivation
zhengyunchao/MosaicForecast
A mosaic detecting software based on phasing and random forest
zhengyunchao/MutMap
MutMap pipeline to identify causative mutations responsible for a phenotype
zhengyunchao/scan-snv
Single cell somatic genotyper
zhengyunchao/sentieon-scripts
Helper scripts for biological data processing from Sentieon
zhengyunchao/utils
misc utility scripts
zhengyunchao/zhengyunchao.github.io
myfirstblog
zhengyunchao/zjunet
Command Line Scripts for ZJU (VPN / WLAN / DNS)