Release the codes for network analysis (metrics calculation, randomized network and visualization), activation map files
- Network efficiency (based on shortest path), and it calls brant (https://github.com/kbxu/brant)
- Modularity and fractional modularity, adapted from generalized Louvain method by Mucha et al, https://github.com/GenLouvain/GenLouvain
- Interaction strength, sum-up the connectivty with ends separately locating in the two ROIs
- Randomized the network for comparing/normalizing modularity index, small-world, et al (call BCT, https://sites.google.com/site/bctnet).
- boxplot overlaid by scattering plot (by notBoxPlot, https://github.com/diazlab/scell/blob/master/mfiles/notBoxPlot.m)
- Combine the Matalb bar plot with the error plot (by https://github.com/FNNDSC/matlab/blob/master/misc/barwitherr.m)
- By FSL/FEAT, input the parameter configuration files
- Activation map for the 7 tasks in HCP data (slect 30 subjects).