Improve figures in cryodrgn analyze
zhonge opened this issue · 2 comments
zhonge commented
Color the kmeans20 samples by the default chimerax map colors
Include visualizations of the PC traversals:
Guillawme commented
Excellent! 🤩
Could you also add this for graph traversals?
zhonge commented
I added the above improvements to the figures and a new jupyter notebook which allows for customization in PR #228
Additional plots/visualizations on the wishlist:
- Plot the latent embeddings vs. pose and CTF parameters. This is convenient for debugging (avoids having to run through the jupyter notebook)
- Plots for graph traversal
- Plot the latent embeddings vs. 3D classification label