Pinned Repositories
10x-CellRanger-SJP
10xGenomics CellRanger - Slurm Job Partitioner (SJP)
2021_09_01_VarChAMP
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
Algo
alphafold
Open source code for AlphaFold.
alphafold3
AlphaFold 3 inference pipeline.
analysis_pipeline
TOPMed analysis pipeline
cloudtools
Scripts for working with Google Cloud Dataproc service
FAVORannotator
zhouhufeng's Repositories
zhouhufeng/2021_09_01_VarChAMP
zhouhufeng/alphafold3
AlphaFold 3 inference pipeline.
zhouhufeng/cell2sentence
Cell2Sentence: Teaching Large Language Models the Language of Biology
zhouhufeng/cell_type_mapper
Repository for storing prototype functionality implementations for the BKP
zhouhufeng/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
zhouhufeng/CONCH
A vision-language foundation model for computational pathology - Nature Medicine
zhouhufeng/DeepVelo
zhouhufeng/dig-bioindex
BIO index for genetic records stored in S3 and FastAPI server.
zhouhufeng/E-P-INAnalyzer
E-P-INAnalyzer: Computational tool for reconstructing enhancer-promoter interaction networks
zhouhufeng/e2g-benchmarking
Benchmarking enhancer-gene predictions using GWAS
zhouhufeng/FAVOR-GPT
zhouhufeng/Genesis
A generative world for general-purpose robotics & embodied AI learning.
zhouhufeng/gnomad_nc_constraint
zhouhufeng/gnomad_qc
zhouhufeng/gosling.js
Grammar of Scalable Linked Interactive Nucleotide Graphics
zhouhufeng/igvf-catalog-frontend
Frontend portal of IGVF Catalog
zhouhufeng/IGVF_E2G_jamboree_2024
Helper scripts for IGVF E2G pillar project jamboree 2024
zhouhufeng/LLaMA-MoE-v2
LLaMA-MoE v2: Exploring Sparsity of LLaMA from Perspective of Mixture-of-Experts with Post-Training
zhouhufeng/MedSAM
Segment Anything in Medical Images
zhouhufeng/MMedAgent
Learning to Use Medical Tools with Multi-modal Agent
zhouhufeng/nuclei.io
nuclei.io: Human-in-the-loop active learning framework for pathology image analysis
zhouhufeng/pgBoost
zhouhufeng/pytorch-image-models
PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNet-V3/V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more
zhouhufeng/scGPT
zhouhufeng/single-cell-pipeline
IGVF single-cell pipeline developed by the 'Single-cell Focus Group' to uniformly process single-cell multi-omic datasets.
zhouhufeng/STAARpipeline
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
zhouhufeng/STAARpipeline-Tutorial
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline and STAARpipelineSummary
zhouhufeng/textgrad
Automatic ''Differentiation'' via Text -- using large language models to backpropagate textual gradients.
zhouhufeng/UNI
Towards a general-purpose foundation model for computational pathology - Nature Medicine
zhouhufeng/User_Codes