zhouzyx

zhouzyx's Stars

• aertslab/SCENIC

  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

  Language:HTML39894

• saezlab/CollecTRI

  Gene regulatory network containing signed transcription factor-target gene interactions

  Language:R496

• suqingdong/pypubmed

  Toolkits for NCBI Pubmed

  Language:Python257

• Bioconductor/basilisk

  Clone of the Bioconductor repository for the basilisk package.

  Language:R2714

• SGDDNB/ShinyCell

  Shiny Interactive Web Apps for Single-Cell Data

  Language:R14352

• jessevig/bertviz

  BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

  Language:Python6.6k760

• crisprVerse/crisprScore

  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

  Language:Python133

• nf-core/crisprseq

  A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

  Language:Nextflow2325

• broadinstitute/gtex-pipeline

  GTEx & TOPMed data production and analysis pipelines

  Language:Python331175

• tsailabSJ/guideseq

  Analysis pipeline for the GUIDE-seq assay.

  Language:Python2312

• brentp/align

  sequence alignment. global, local, glocal.

  Language:Python4014

• kleinstiverlab/HT-PAMDA

  Analysis pipeline for CRISPR high-throughput PAM determination assay (HT-PAMDA) data

  Language:Python33

• HaojiaWu/plot1cell

  A R package for advanced single cell data viz

  Language:R4725

• rnakato/ShortCake

  A docker image for single-cell analysis

  Language:R6213

• crisprVerse/crisprDesign

  Comprehensive design of CRISPR gRNAs for nucleases and base editors

  Language:R186

• microsoft/autogen

  A programming framework for agentic AI. Discord: https://aka.ms/autogen-dc. Roadmap: https://aka.ms/autogen-roadmap

  Language:Jupyter Notebook28.8k4.2k

• CRISPRJWCHOI/CRISPR_toolkit

  CRISPR Indel, base edit analysis

  Language:Python105

• OpenGene/scrnapip

  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis

  Language:HTML9815

• VKonstantakos/CRISPR-design

  List of software/websites/databases/reviews for CRISPR gene editing.

  5

• CRISPRlab/CRISPRclassify

  Language:Java6

• SubGlitch1/GuideRNA_Designer

  CRISPR Guide RNA Designer

  Language:Python61

• H2muller/CROPSR

  CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).

  Language:Python88

• dylanbeeber/crispRdesignR

  Software used to design guide RNA sequences for CRISPR/Cas9 genome editing

  Language:R139

• davidliwei/awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  477106

• LinkSoul-AI/Chinese-Llama-2-7b

  开源社区第一个能下载、能运行的中文 LLaMA2 模型！

  Language:Python2.2k203

• samuel-marsh/scCustomize

  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

  Language:R18919

• Zhong-Lab-UCSD/Genomic-Interactive-Visualization-Engine

  Genomic Interactive Visualization Engine

  Language:JavaScript14231

• BIMSBbioinfo/genomation

  R package for genomic feature analysis and visualization

  Language:R7222

• alosdiallo/DNA_Rchitect

  A Shiny App for visualizing genomic data

  Language:JavaScript189

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python62.7k7.8k