/easyVAF

Somatic sequence variants are associated with a cancer diagnosis, prognostic stratification, and treatment response. Variant allele frequency (VAF) is the percentage of sequence reads with a specific DNA variant over the read depth at that locus. VAFs on targeted loci under different (experimental) conditions are often compared. We present our R package ‘ esayVAF’ for parametric and non-parametric comparison of VAFs among multiple treatment groups.

Primary LanguageRGNU General Public License v3.0GPL-3.0

Stargazers