Pinned Repositories
metapipeline-DNA
Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction
package-moPepGen
Multi-Omics Peptide Generator
tool-NFTest
CLI to automate Nextflow pipeline testing
exceRNApipeline
Data processing pipeline for extracellular small RNA-seq from human specimen
genomic-algorithms
A collection of genomic algorithms implemented with python and c++
HTSet
R package to store, manipulate, analyze, and visualize high through-put experiment data
Metabase
R package to store, manipulate, analyze, and visualize high through-put experiment data
projects
pubmed-bib
Convert PubMed ID (PMID) to BibTex reference
Rproj
Create .Rproj file from command line
zhuchcn's Repositories
zhuchcn/projects
zhuchcn/exceRNApipeline
Data processing pipeline for extracellular small RNA-seq from human specimen
zhuchcn/shinyvue
zhuchcn/sms
zhuchcn/twitter-lexica
zhuchcn/genomic-algorithms
A collection of genomic algorithms implemented with python and c++
zhuchcn/hts-toolkit
Command line tools that you might find useful for HTS data processing
zhuchcn/HTSet
R package to store, manipulate, analyze, and visualize high through-put experiment data
zhuchcn/alzheimer_pilot
zhuchcn/anrich
R package to perform enrichment analysis
zhuchcn/biopython
Official git repository for Biopython (originally converted from CVS)
zhuchcn/blogs
zhuchcn/ctat-genome-lib-builder
Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
zhuchcn/egg_study
zhuchcn/hugo-test
zhuchcn/mkdocs-deploy-gh-pages
GitHub Action to deploy an MkDocs site to GitHub Pages
zhuchcn/mlms
R package for linear model selection for covariants
zhuchcn/my-wondeful-study
zhuchcn/neoflow
NeoFlow: a proteogenomics pipeline for neoantigen discovery
zhuchcn/nextflow
A DSL for data-driven computational pipelines
zhuchcn/OpenMS
The codebase of the OpenMS project
zhuchcn/public-R-BoutrosLab-plotting-general
zhuchcn/sec-method-study
zhuchcn/sr8278
zhuchcn/STAR-Fusion
STAR-Fusion codebase
zhuchcn/TCGAbiolinks
TCGAbiolinks
zhuchcn/test
zhuchcn/test-action
zhuchcn/test-mkdocs-gh-pages
zhuchcn/zhuchcn.github.io