Pinned Repositories
AITL2023
code for our publication
analysis-salt-responsive
Analysis of 16S sequencing data for paper "Salt-responsive gut commensal modulates TH17 axis and disease"
AnnotationDatabase
annotation database for human genetics, genomics and epigenomics
atac-seq_related
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bioinfo_tasks
储存一些平时写的小脚本及帮助文件
Bioinformatics-Resources
A curated list of resources for learning bioinformatics.
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
r4ds
R for data science
SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
zhumengyan's Repositories
zhumengyan/r4ds
R for data science
zhumengyan/SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
zhumengyan/AITL2023
code for our publication
zhumengyan/AnnotationDatabase
annotation database for human genetics, genomics and epigenomics
zhumengyan/atac-seq_related
zhumengyan/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
zhumengyan/bioinfo_tasks
储存一些平时写的小脚本及帮助文件
zhumengyan/Bioinformatics-Resources
A curated list of resources for learning bioinformatics.
zhumengyan/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
zhumengyan/CNV-pepline
list softwares and papers about copy number variation
zhumengyan/DataWarehouse
DataSource
zhumengyan/CRC2Liver
script for CRC liver metastasis
zhumengyan/gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
zhumengyan/Hannigan_CRCVirome_mBio_2018
Investigating the gut virus communities associated with colon cancer.
zhumengyan/HCC2023
code for HCC analysis
zhumengyan/HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
zhumengyan/ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
zhumengyan/interesting_papers
interesting papers
zhumengyan/msigdf
Molecular Signatures Database (MSigDB) in a data frame
zhumengyan/my_spiders
zhumengyan/myblog
my blog using rblogdown
zhumengyan/nanopore_related
nanopore sequencing
zhumengyan/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
zhumengyan/R_plot
ggplot2图形绘制学习模仿
zhumengyan/scFEA
single cell Flux Estimation Analysis (scFEA)
zhumengyan/scrat
Sing Cell R Analysis Toolkit
zhumengyan/scRNA.seq.course
Analysis of single cell RNA-seq data course
zhumengyan/SingleR
SingleR: Single-cell RNA-seq cell types Recognition
zhumengyan/TCAG-WGS-CNV-workflow
Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods
zhumengyan/tmpdata