/Bioinformatics-Resources

Github repositories on programming and bioinformatics resources for learning and training.

1. Bioinformatics Resources From Nordic ๐Ÿ‡ฉ๐Ÿ‡ฐ ๐Ÿ‡ธ๐Ÿ‡ช ๐Ÿ‡ณ๐Ÿ‡ด ๐Ÿ‡ฎ๐Ÿ‡ธ ๐Ÿ‡ซ๐Ÿ‡ฎ

We aim to compile a list of bioinformatics resources and tools that are created/provided by people in Nordics, for learning and training.

How to contribute? Contribute by submitting pull requests, or posting suggestions as issues. Thank you.

1.1 General or Mixed bioinformatic resources

  1. RASflow: RNA-Seq Analysis Snakemake Workflow by Xiaokang Zhang

1.2 Open-source Practice Datasets

Nordic databases containing curated and well-annotated testing datasets.

Genomics

Transcriptomics

Proteomics

Metabolomics

Systems Biology

Epigenetics

Simulation

Other

1.3 Coding Tutorials

Tutorials and lectures developed by Nordic organisations and/or researchers.

General Coding Practices

Genomics

Transcriptomics

Proteomics

Metabolomics

Systems Biology

Epigenetics

Simulation

Other

1.4 Bioinformatics Concepts

Nordic resources in form of books, articles, web pages and other resources that describe bioinformatic concepts but does not include coding practice.

2. Bioinformatic Resources From Outside Nordic:

2.1 General or Mixed bioinformatic resources

  1. Biotools - A compilation of Bioinformatic Resources by John Didion
  2. Awesome Bioinformatics - A compilation of Bioinformatic Resources by Daniel E Cook
  3. Learning Bioinformatics for free at Open Source Society University (OSSU)
  4. EMBL-EBI on-demand training

2.2 Open-source Practice Datasets

Any database containing curated and well-annotated testing datasets.

Genomics

Transcriptomics

Proteomics

Metabolomics

Systems Biology

Epigenetics

Simulation

Other

2.3 Coding Tutorials

Tutorials and lectures developed by any organisation and/or researcher.

General Coding Practices

  1. Getting started with Unix, R, and Python at Software Carpentry
  2. Unix - Useful oneliners by Stephen Turner
  3. Unix - Getting started with Linux
  4. Python - Getting started at w3schools
  5. R - Getting started at Datacamp

Genomics

  1. Getting started with genomics tools and resources
  2. DNA-Seq workshop by Mathieu Bourgey, 2018

Transcriptomics

Proteomics

Metabolomics

Systems Biology

Epigenetics

Simulation

Other

2.4 Bioinformatics Concepts

Any book, article, web page and other resources that describe bioinformatic concepts but does not include coding practice.

General

  1. An Introduction to Applied Bioinformatics, 2nd Edition

Contributors:

  • Nazeefa Fatima
  • Johan ร–sterlund

Contribute by submitting pull requests, or posting suggestions as issues. Thank you.