Pinned Repositories
Biopython-cn
Biopython Tutorial Chinese Translation
CapR
CapR calculates probabilities that each RNA base position is located within each secondary structural context for long RNA sequences.
ceres
Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
ChiRP-seq
clipper
A tool to identify CLIP-seq peaks
comet
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
demeter2
Inference of gene dependency from RNAi screening datasets.
DNA-methylation-analysis
my notes on DNA methylation analysis (arrays and sequencing data)
dplyr
Dplyr: A grammar of data manipulation
eQTL-Brain
eQTL (single and Meta analysis of Brain tissue)
zhyguo's Repositories
zhyguo/CapR
CapR calculates probabilities that each RNA base position is located within each secondary structural context for long RNA sequences.
zhyguo/ceres
Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
zhyguo/comet
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
zhyguo/demeter2
Inference of gene dependency from RNAi screening datasets.
zhyguo/DNA-methylation-analysis
my notes on DNA methylation analysis (arrays and sequencing data)
zhyguo/dplyr
Dplyr: A grammar of data manipulation
zhyguo/books
:books: Books worth reading
zhyguo/gatk
GATK Official Release Repository
zhyguo/ipanda
insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene expression data. The method introduced here includes coexpression analysis and gene importance estimation to robustly identify relevant pathways and biomarkers for patient stratification.
zhyguo/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
zhyguo/jvarkit
Java utilities for Bioinformatics
zhyguo/MDSeq
MDSeq: Gene expression mean and variability analysis for RNA-seq counts
zhyguo/mlr
Machine Learning in R
zhyguo/NGS
Next-Gen Sequencing tools from the Horvath Lab
zhyguo/OCRF
zhyguo/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
zhyguo/pu-learning
Positive and unlabeled learning wrappers for scikit-learn
zhyguo/rna2essential
rna expression to essential genes
zhyguo/RNABind
zhyguo/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
zhyguo/scikit-learn
scikit-learn: machine learning in Python
zhyguo/scikit-learn-videos
Jupyter notebooks from the scikit-learn video series
zhyguo/scikit-sos
A Python implementation of the Stochastic Outlier Selection algorithm
zhyguo/scRNA.seq.course
Analysis of single cell RNA-seq data course, Cambridge University, UK
zhyguo/SLI-OvarianCancer_Project
zhyguo/Statistical-Rethinking
An interactive online reading of McElreath's Statistical Rethinking
zhyguo/Statistical-Rethinking-with-Python-and-PyMC3
Python/PyMC3 port of the examples in " Statistical Rethinking A Bayesian Course with Examples in R and Stan" by Richard McElreath
zhyguo/statistics_for_bioinformatics
Packages under development, which are used as support to the course "Statistics for bioinformatics" and the accompanying book.
zhyguo/Theano
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.
zhyguo/zy.github.io