zhyguo

zhyguo's Stars

• boutroslab/CRISPRAnalyzeR

  CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

  Language:HTML8031

• qinwf/awesome-R

  A curated list of awesome R packages, frameworks and software.

  Language:R6k1.5k

• faryabib/inteGREAT

  inteGREAT is an algorithm for differential and non-differential integration of multiple genomic data sets.

  Language:Haskell11

• cmap/cmapR

  Tools for manipulating annotated data matrices

  Language:R8434

• igraph/python-igraph

  Python interface for igraph

  Language:Python1.3k247

• igraph/igraph

  Library for the analysis of networks

  Language:C1.7k404

• saezlab/pypath

  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

  Language:Python13445

• waldronlab/Statistical-Rethinking

  An interactive online reading of McElreath's Statistical Rethinking

  Language:Rebol12542

• genomicsclass/labs

  Rmd source files for the HarvardX series PH525x

  Language:R2k1.9k

• BackofenLab/IntaRNA

  Efficient target prediction incorporating accessibility of interaction sites

  Language:C++4527

• cs231n/cs231n.github.io

  Public facing notes page

  Language:Jupyter Notebook10.2k4.1k

• bio-ontology-research-group/phenogocon

  Method to predict phenotypes from functions

  Language:Groovy31

• bmpvieira-forks/ssea

  Automatically exported from code.google.com/p/ssea

  Language:Python21

• lisa-lab/DeepLearningTutorials

  Deep Learning Tutorial notes and code. See the wiki for more info.

  Language:Python4.1k2.1k

• fukunagatsu/RIblast

  RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis

  Language:C1610

• TAGC-Brun/RAINET-RNA

  RAINET-RNA project source code

  Language:Python1

• ryanlayer/giggle

  Interval data structure

  Language:C22329

• janishar/mit-deep-learning-book-pdf

  MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

  Language:Java12.8k2.7k

• bgruening/galaxy-rna-workbench

  Galaxy RNA workbench

  Language:HTML3835

• RamanLab/FastSL

  A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models

  Language:Matlab76

• wassermanlab/TFFM

  TFFM framework

  Language:Python115

• xypan1232/iDeep

  iDeep: integrated prediction of RNA-protein binding sites using deep learning

  Language:HTML3918

• rli012/GDCRNATools

  GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC

  Language:R6741

• ge11232002/TFBSTools

  Software Package for Transcription Factor Binding Site (TFBS) Analysis

  Language:R2510

• gatechatl/ChiRP-seq

  Language:Java11

• idekerlab/KEGGscape

  A Cytoscape app for importing KGML(KEGG pathway XML)

  Language:Java2110

• idekerlab/Network_Evaluation_Tools

  Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

  Language:Jupyter Notebook3219

• ibn-salem/paralog_regulation

  Co-regulation analysis of duplicated gene pairs with respect to the three-dimensional chromatin architecture as reveald by Hi-C data.

  Language:R21

• TomKellyGenetics/slipt

  Synthetic Lethal Prediction Tool (R package). PhD thesis project. @mikblacklab

  Language:R21

• patflick/tsppi

  Analysis of tissue-specific protein-protein interaction networks

  Language:Python102