zilhua

Huazhong Agricultural Universitywuhan

Pinned Repositories

23andme2vcf
convert your 23andme raw file to VCF
Language:Perl00
BedAnno
Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
Language:Perl0 1 00
biom262-2016
Code and notebooks for BIOM262
Language:Jupyter Notebook00
Biopython-cn
Biopython Tutorial Chinese Translation
Language:Python00
bypy
Python client for Baidu Yun (Personal Cloud Storage) 百度云/百度网盘Python客户端
Language:Python00
callingHRD
Calling Homologom Recombination Deficiency(HRD)
Language:Python0 1 00
CodeShare
A simple code share site by Tornado runing SAE.
Language:Python1 1 00
diffHic
An R package for differential analyses of Hi-C data
Language:R1 1 00
tadbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Language:Python64

zilhua's Repositories

zilhua/diffHic
An R package for differential analyses of Hi-C data
Language:R1 1 00
zilhua/23andme2vcf
convert your 23andme raw file to VCF
Language:Perl00
zilhua/BedAnno
Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
Language:Perl0 1 00
zilhua/biom262-2016
Code and notebooks for BIOM262
Language:Jupyter Notebook00
zilhua/callingHRD
Calling Homologom Recombination Deficiency(HRD)
Language:Python0 1 00
zilhua/ChimPipe
Documentation:
Language:Awk1 0
zilhua/chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
Language:Python
zilhua/ComplexHeatmap
make complex heatmaps as well as self define annotation graphics
Language:R
zilhua/decoder-1
decode your genome
Language:Python1 0
zilhua/doc-ANNOVAR
Documentation for the ANNOVAR software
1 0
zilhua/GEMINI_IO
Data repository and source code for GEMINI IO vs Chemo-IO analysis
zilhua/HiCPlotter
Language:Python1 0
zilhua/hosts
:statue_of_liberty:最新可用的google hosts文件。镜像：
zilhua/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX1 0
zilhua/Machine-Learning-with-Python
Python codes for common Machine Learning Algorithms
Language:Jupyter Notebook2 0
zilhua/minfi
Devel repository for minfi
Language:R1 0
zilhua/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
Language:Java
zilhua/PlottingSeries
One week, One plotting tutorial & Story
Language:Python
zilhua/pyIDAT
analysis for illumina beadarray .idat format file
Language:Python1 0
zilhua/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C
zilhua/sciclone-meta
accessory scripts and documentation related to the sciclone R package at genome/sciclone
Language:R1 0
zilhua/scipy-lecture-notes_cn
Pytho科学计算生态的介绍的中文翻译，英文原文地址：
Language:Jupyter Notebook1 0
zilhua/seafile
Open source cloud storage with file encryption and group sharing, and emphasis on reliability and high performance.
Language:C1 0
zilhua/SingleCell
Code repository for single cell RNA-seq
zilhua/sklearn_cn
We hope more Chinese could know about this machine learning package scikit-learn
zilhua/snvtools
some tools for checking snv
Language:Python1 0
zilhua/TCGA_AB_Compartments
A/B compartments for 12 cancer types estimated from TCGA methylation data
Language:R
zilhua/visual-vocabulary
Small examples of data driven graphics -- to be used as starting points.
Language:JavaScript
zilhua/weiboRobot
微博机器人
Language:Python1 0
zilhua/XX-Net
接力GoAgent
Language:Python1 0