Pinned Repositories
CancerEcologyPaperScripts
jupyter python scripts for treatment options and success rates for cancer and rat eradication
Co-occurring_Actionable_Genes
CSIMAC-1
data-engineering-for-aws-immersion-day
Lab Instructions for Data Engineering Immersion Day
Gene-Drug-Association
Pipeline for Gene-Drug association for CCLE cancer cell line pharmacogenomic data
immune_deconvolution_benchmark
Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363
ITH_TCGA
jax-tutorial
Tutorial for Jackson Labs intro to Nextflow, containers, FlowCraft and Deploit
MASSPRF
MASSPRF_demo_simulations
zimingz's Repositories
zimingz/MASSPRF
zimingz/Co-occurring_Actionable_Genes
zimingz/CancerEcologyPaperScripts
jupyter python scripts for treatment options and success rates for cancer and rat eradication
zimingz/CSIMAC-1
zimingz/data-engineering-for-aws-immersion-day
Lab Instructions for Data Engineering Immersion Day
zimingz/Gene-Drug-Association
Pipeline for Gene-Drug association for CCLE cancer cell line pharmacogenomic data
zimingz/immune_deconvolution_benchmark
Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363
zimingz/ITH_TCGA
zimingz/jax-tutorial
Tutorial for Jackson Labs intro to Nextflow, containers, FlowCraft and Deploit
zimingz/MASSPRF_demo_simulations
zimingz/MathematicaCodesForTemporalInference
zimingz/ml-workshop-1-of-4
Introduction to Machine learning with Python, 4h interactive workshop
zimingz/ml-workshop-2-of-4
Intermediate Machine Learning with Scikit-learn, 4h interactive workshop
zimingz/ml-workshop-3-of-4
Advanced Machine Learning with Scikit-learn part I
zimingz/ml-workshop-4-of-4
Advanced Machine Learning with Scikit-learn part II
zimingz/okAPI
Recipes and Tutorials for Automation & Extension on the CGC and SBPLAT platforms
zimingz/PDX-SOC
Drug response graphs for PDX tumors
zimingz/sciclone
An R package for inferring the subclonal architecture of tumors
zimingz/sciclone-meta
accessory scripts and documentation related to the sciclone R package at genome/sciclone
zimingz/Survival_Analyses