Imaris

Here I will try to document my Imaris related Python libraries, as well as my Python XTensions.

In particular,

[[BridgeLib|BridgeLib]] is a library I independently wrote to interface Python code with Imaris.
[[TkDialog|TkDialog]] is the library I use to rapidly build simple Tk user interfaces for my XTensions.

Tutorials:

Tutorial 0: Here's a Hello Imaris tutorial showing how to link Imaris and jupyter-notebook.
Tutorial 1: Number of cells vs time tutorial showing how to perform spot operations (counting unique spots / timepoints) using numpy and plotting the result using matplotlib.
Tutorial 2: Plotting tracks tutorial showing how to extract track data (position and statistics) and plot various types of graphs (2-D data for now).
Tutorial 3: Tracking maggots tutorial showing how to load a video in Python (hackish way using FFMpeg), do some image processing to remove the background, then send the data to Imaris and track the maggots using surfaces.
Tutorial 4: Working with surfaces tutorial showing how to pull surfaces from Imaris. TODO: Will flesh this one out to show how to send surfaces back into Imaris.