zipho/galaxy-tools

FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

galaxy-tools

FLS tools and tool-wrappers for Galaxy.

Tools wrapping 3rd-party software:

• BLAT
• CEAS
• fastq_screen
• MACS2
• pal_finder
• SOLiD_preprocess_filter_v2.pl
• trimmomatic
• weeder
• weeder2
• bedgraph_to_wig converter

Tools wrapping in-house scripts and programs:

• motif_tools
• make_macs_xls
• qc_boxplotter
• RnaChipIntegrator
• SamStats

Data managers:

• data_manager_mothur_toolsuite

Packages for installing tool dependencies:

• package_numpy_1_8
• package_python2_7

See the individual READMEs files for information on how to install into a local Galaxy; alternatively a number of these tools are available from the main toolshed: https://toolshed.g2.bx.psu.edu/