Zipkin Quantitative Ecology Lab

Farr_etal_2022_ConsBiol

M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data. Conservation Biology e13934.

Policies

Lab policies and operating procedures

Rossman_etal_2016_EcolAndEvol

Rossman S., Ostrom P.H., Gordon F., and Zipkin E.F. 2016. Beyond carbon and nitrogen: guidelines for estimating three‐dimensional isotopic niche space. Ecology and Evolution 6: 2405-2413.

Saunders_etal_2016_GEB

Saunders, S.P., Ries, L., Oberhauser, K.S., & Zipkin, E.F. (2016) Evaluating confidence in climate-based predictions of population change in a migratory species. GEB. 25: 1000-1012.

Saunders_etal_2018_JAE

Saunders, S.P., Cuthbert, F.J., & Zipkin, E.F. (2018) Evaluating population viability and efficacy of conservation management using integrated population models. JAE. 55: 1380-1392.

Saunders_etal_2019_Ecol

Saunders, S.P., Farr, M.T., Wright, A.D., Bahlai, C.A., Ribeiro, J.W., Rossman, S., Sussman, A.L., Arnold, T.W., & Zipkin, E.F. 2019. Disentangling data discrepancies and deficiencies with integrated population models. Ecology 100(6): e02714.

Sussman_etal_2019_MEE

Sussman A.L., Gardner B., Adams E.M., Salas L., Kenow K.P., Luukkonen D.R., Monfils M.J., Mueller W.P., Williams K.A., Leduc-Lapierre M., & Zipkin E.F. 2019. A comparative analysis of common methods to identify waterbird hotspots. MEE 10(9): 1454-1468.

Zipkin_etal_2014_EcolAndEvol

Zipkin, E.F., Sillett, T.S., Grant, E.H.C., Chandler, R.B., and Royle, J.A. (2014) Inferences from count data using multi-state population models: a comparison to capture-recapture approaches. Ecology and Evolution. 4: 417-426.

zipkinlab.github.io

http://zipkinlab.github.io - Code aggregation site for projects in the Zipkin lab

Zylstra_etal_2021_NEE

zipkinlab/Policies

Lab policies and operating procedures

zipkinlab/zipkinlab.github.io

http://zipkinlab.github.io - Code aggregation site for projects in the Zipkin lab

zipkinlab/Farr_etal_2022_ConsBiol

M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data. Conservation Biology e13934.

zipkinlab/Zylstra_etal_2021_NEE

zipkinlab/Wright_etal_2020_LandEcol

Wright, A.D., Grant, E.H.C., & Zipkin, E.F. 2020. A hierarchical analysis of habitat area, connectivity, and quality on amphibian diversity across spatial scales.

zipkinlab/Zipkin_etal_2020_Science

Zipkin, E.F., DiRenzo, G.V., Ray, J.M., Rossman, S., & Lips, K.R. 2020. Tropical snake diversity collapses after widespread amphibian loss. Science 367: 814–816.

zipkinlab/Zipkin_etal_2023_JAE

Zipkin E.F. , Doser J.W., Davis C.L., Leuenberger W., Ayebare S., Davis K.L., (2023) Integrated community models: A framework combining multi-species data sources to estimate the status, trends, and dynamics of biodiversity. Journal of Animal Ecology.

zipkinlab/Cabodevilla_etal_2022_AgEE

Cabodevilla, X., Wright, A. D., Villanua, D., Arroyo, B., and Zipkin, E. F. (2022). The implementation of irrigation leads to declines in farmland birds. Agriculture, Ecosystems, and Environment 323 (2022) 107701. https://doi.org/10.1016/j.agee.2021.107701

zipkinlab/Ayebare_etal_2023_ProcB

An environmental habitat gradient and within-habitat segregation enable co-existence of ecologically similar bird species

zipkinlab/Blommel

zipkinlab/Davis_etal_2022_EcolAndEvol

Davis, K. L., Silverman, E. D., Sussman, A. L., Wilson, R. R., Zipkin, E. F. (2022). Errors in aerial survey count data: Identifying pitfalls and solutions. Ecology and Evolution 12:e8733.

zipkinlab/Davis_etal_2023_BioCons

Davis, K.L., S.P. Saunders, S. Beilke, E.R. Ford, J. Fuller, A. Landgraf, E.F. Zipkin. (2023). Breeding season management is unlikely to improve population viability of a data-deficient migratory species in decline. Biological Conservation 283:110104.

zipkinlab/DiRenzo_etal_2018_EcoApps

DiRenzo, G. V., E. Zipkin, E. C. Grant, J. A. Royle, A. V. Longo, K. Z. Zamudio, and K. R. Lips. 2018. Eco-evolutionary rescue promotes host-pathogen coexistence. Ecological Applications 28: 1948-1962.

zipkinlab/Doser_et_al_2024_MEE

Doser, J. W., Finley, A. O., Kéry, M., & Zipkin, E. F. (2024). spAbundance: An R package for single-species and multi-species spatially-explicit abundance models. Methods in Ecology and Evolution.

zipkinlab/Doser_etal_2021_EcoApps

Doser, J. W., A. S. Weed, E. F. Zipkin, K. M. Miller, and A. O. Finley. 2021. Trends in bird abundance differ among protected forests but not bird guilds. Ecological Applications 00(00):e02377. 10. 1002/eap.2377

zipkinlab/Doser_etal_2021_MEE

Doser, J. W., Finley, A. O., Weed, A. S., & Zipkin, E. F. (2021). Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance. Methods in Ecology and Evolution, 12(6), 1040-1049.

zipkinlab/Doser_etal_2022_MEE

Doser, J. W., Leuenberger, W., Sillett, T. S., Hallworth, M. T., & Zipkin, E. F. (2022). Integrated community occupancy models: A framework to assess occurrence and biodiversity dynamics using multiple data sources. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13811

zipkinlab/Doser_etal_2022_MEE_A

Doser, J. W., Finley, A. O., Kéry, M., & Zipkin, E. F. (2022). spOccupancy: An R package for single-species, multi-species, and integrated spatial occupancy models. Methods in Ecology and Evolution. DOI: https://doi.org/10.1111/2041-210X.13897

zipkinlab/Doser_etal_2024_GEB

zipkinlab/Doser_etal_2024_JABES

zipkinlab/Farr_etal_2019_EcoApps

Farr, M.T., Green, D.S., Holekamp, K.E., Roloff, G.J., & Zipkin, E.F. 2019. Multi-species hierarchical modeling reveals variable responses of African carnivores to management alternatives. Ecological Applications 9(2): e01845.

zipkinlab/Farr_etal_2021_Ecol

Farr, M. T., D. S. Green, K. E. Holekamp, and E. F. Zipkin. 2021. Integrating distance sampling and presence-only data to estimate species abundance. Ecology 102(1):e03204. 10.1002/ecy.3204

zipkinlab/Farr_etal_2024_MEE

zipkinlab/Gilbert_etal_2024_Ecol

zipkinlab/Gilbert_etal_2024_TBD

zipkinlab/Green_etal_2019_PTRS

Green, D.S., Farr, M.T., Holekamp, K.E., Strauss, E.D., & Zipkin, E.F. 2019. Can hyena behavior predict abundances of sympatric carnivores? Philosophical Transactions of the Royal Society 374(1781): 20180052.

zipkinlab/Williams_etal_2024_NatComm

Code and data for Williams, Zipkin, and Brodie (in review)

zipkinlab/Wright_etal_2022_EcoApps

Wright, A. D., Grant, E. H. C., Zipkin, E. F. (2022). A comparison of monitoring designs to assess wildlife community parameters across spatial scales. Ecological Applications e2621

zipkinlab/Zylstra_etal_2020_USGSreport

Zylstra, E. R., W. E. Thogmartin, M. I. Ramirez, and E. F. Zipkin. 2020. Summary of available data from the monarch overwintering colonies in central Mexico, 1976-1991. USGS Open-File Report 2020-1150.

zipkinlab/Zylstra_etal_2022_GCB

Zylstra, E. R., Neupane, N., & Zipkin, E. F. (2022). Multi-season climate projections forecast declines in migratory monarch butterflies. Global Change Biology.