Systems biology informed deep learning for inferring parameters and hidden dynamics
The code for the paper Systems biology informed deep learning for inferring parameters and hidden dynamics, PLOS Computational Biology, 2020.
The code depends on the deep learning package DeepXDE.
- glycolysis.py: Yeast glycolysis model
- apoptosis.py: Cell apoptosis model
- glucose_insulin.py: Ultradian endocrine model
- FIM.ipynb: Fisher information matrix. This code is written in Julia.