ziwenzhu

ziwenzhu's Stars

• sydneycytometry/Spectre

  A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.

  2

• smorabit/hdWGCNA

  High dimensional weighted gene co-expression network analysis

  Language:R35635

• sridnona/cb_sniffer

  mutation(barcode) caller for 10x single cell data

  Language:Python4316

• kasumaz/AdultOLgenesis

  Single cell analysis of the generation and regulation of oligodendrocyte lineage cells from the adult subventricular zone.

  Language:R2

• const-ae/ggsignif

  Easily add significance brackets to your ggplots

  Language:R58943

• ctlab/fgsea

  Fast Gene Set Enrichment Analysis

  Language:R37567

• skinnerlab/MeDIP-seq

  A set of scripts and functions for analyzing MeDIP-seq datasets

  Language:R154

• dpeerlab/Palantir

  Single cell trajectory detection

  Language:Jupyter Notebook21950

• zhanglhbioinfor/DIRECT-NET

  Language:HTML105

• Danko-Lab/TED

  a fully Bayesian approach to deconvolve tumor microenvironment

  Language:R6010

• Marc-3d/quickPIV

  Language:Julia164

• ingewortel/celltrackR

  An R package for the analysis and interpretation of cell migration tracks.

  Language:R133

• ImmuneDynamics/Spectre

  A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

  Language:HTML5621

• GreenleafLab/brainchromatin

  Code used to analyze single cell RNA and ATAC sequencing in developing human brain

  Language:R317

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R387138

• saeyslab/FlowSOM

  Using self-organizing maps for visualization and interpretation of cytometry data

  Language:R257

• tanlabcode/CytoTalk

  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.

  Language:R3411

• sqjin/CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

  Language:R636145

• r3fang/SnapATAC

  Analysis Pipeline for Single Cell ATAC-seq

  Language:R305126

• pinellolab/STREAM

  STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

  Language:Jupyter Notebook17348

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k256

• ncborcherding/escape

  Easy single cell analysis platform for enrichment

  Language:R14620

• LocasaleLab/Single-Cell-Metabolic-Landscape

  Pipeline for exploring metebolic heterogeneity at single-cell resolution

  Language:R7149

• MetaSys-LISBP/IsoCor

  IsoCor: Isotope Correction for mass spectrometry labeling experiments

  Language:Python249

• 4dsoftware/elemcor

  natural abundance and isotopic impurity correction

  Language:MATLAB61

• XiaoyangSu/AccuCor

  Language:R1611

• fumiomatsuda/mfapy

  A python toolbox for 13C metabolic flux analysis

  Language:Python199

• cytoflow/cytoflow

  A Python toolbox for quantitative, reproducible flow cytometry analysis

  Language:Python17149