zjwinn
Postdoctoral Research Geneticist in the United States Department of Agriculture (USDA) Agriculture Research Service (ARS). ORCID ID: 0000-0003-1543-1527.
USDA ARSRaleigh, North Carolina
Pinned Repositories
HaploCatcher
An R package for inferring Haplotypes from high-density, non-targeted genotyping platforms
HAPLOCATCHER-AN-R-PACKAGE-FOR-PREDICTION-OF-HAPLOTYPES
A data and code repository for the paper of the same name.
KlusterCaller-to-VCF
Modify KASP assay calls to a VCF format
Mapping-of-a-Novel-Major-Effect-Hessian-Fly-Partial-Resistance-Locus-in-Southern-SRWW-LA03136E71
Data repository for the paper of the same name.
MAS-Summary-Script
An R script for parsing VCFs into MAS reports for wheat breeders on the east coast of the US
MVGS-improves-GP-Accuracy-in-SRWW
This is a public repository for relevant code from the publication of the same name.
NC13-20076-FHB-QTL-Mapping
A data repository related to the paper "Genetic Mapping of Resistance To Fusarium Head Blight In Soft Red Winter Wheat Line NC13-20076"
Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW
This is a public repository for relevant code from the publication of the same name.
SNP-Sequence-Puller
A program for pulling flanking sequences from a reference genome for a SNP
TASSEL-VCF-Fixer
A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate
zjwinn's Repositories
zjwinn/HAPLOCATCHER-AN-R-PACKAGE-FOR-PREDICTION-OF-HAPLOTYPES
A data and code repository for the paper of the same name.
zjwinn/Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW
This is a public repository for relevant code from the publication of the same name.
zjwinn/HaploCatcher
An R package for inferring Haplotypes from high-density, non-targeted genotyping platforms
zjwinn/KlusterCaller-to-VCF
Modify KASP assay calls to a VCF format
zjwinn/Mapping-of-a-Novel-Major-Effect-Hessian-Fly-Partial-Resistance-Locus-in-Southern-SRWW-LA03136E71
Data repository for the paper of the same name.
zjwinn/MAS-Summary-Script
An R script for parsing VCFs into MAS reports for wheat breeders on the east coast of the US
zjwinn/MVGS-improves-GP-Accuracy-in-SRWW
This is a public repository for relevant code from the publication of the same name.
zjwinn/NC13-20076-FHB-QTL-Mapping
A data repository related to the paper "Genetic Mapping of Resistance To Fusarium Head Blight In Soft Red Winter Wheat Line NC13-20076"
zjwinn/Phenotyping-Anther-Extrusion-of-Wheat-Using-Image-Analysis
Repository for MDPI Paper in 2021
zjwinn/Profiling-of-FHB-Resistance-QTL-Haplotypes-Through-MM-GBG-and-ML
This is the data repository for the publication of the same name.
zjwinn/SNP-Sequence-Puller
A program for pulling flanking sequences from a reference genome for a SNP
zjwinn/TASSEL-VCF-Fixer
A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate
zjwinn/Utilization-of-a-Publicly-Available-Diversity-Panel-in-GP-of-FHB-Resistance-Traits-in-Wheat
This is a public repository for relevant code from the publication of the same name.
zjwinn/Winn-Dissertation-Chapter-3
This is the public repository for information related to the thesis chapter of the same name as the title.
zjwinn/Winn-Dissertation-Chapter-4
This is the public repository for information related to the thesis chapter of the same name as the title.
zjwinn/Yield-Protection-Afforded-By-Imidaclorpid-During-HF-Infestation-In-Six-Backgrounds
This is a public data repository for data related to a publication.
zjwinn/wheat-assembly
The repository contains scripts for wheat genome assembly of PacBio CCS reads.
zjwinn/wheat-te-annotation
This pipeline uses repeatmasker, repeatmodeler, and the TREP database (https://trep-db.uzh.ch/) to annotate and mask transposable elements (TEs) in a wheat genome assembly.