double nan thing in plots?

Question

double nan thing in plots?

zktuong opened this issue 2 years ago · 2 comments

where are the extra NAs coming from?

Answer 1 · 2022-10-12T08:59:08.000Z

related to ddl.tl.clone_size?
https://sc-dandelion.readthedocs.io/en/latest/notebooks/4_dandelion_visualization-10x_data.html#Calculating-size-of-clones

Answer 2 · 2022-10-14T13:19:16.000Z

OK so large NA is just the plotting style with sc.pl.umap(..., groups = []) and the nan actually refers to cells that are probably orphan VJ (hence no clone).

So what would be a more elegant way of dealing with this...?