Pinned issues
Issues
- 1
Incompatibility with latest matplotlib
#383 opened by grst - 1
- 1
mouse TRA contigs not passing pre-processing
#376 opened by zktuong - 1
Bugs in 'pp.check_contigs'
#369 opened by chf8991 - 1
Singularity Container Preprocessing Error
#368 opened by bpr4242 - 3
Number of PASS and FAIL in output of the function ddl.pp.reannotate_genes
#364 opened by hieunguyen411 - 7
- 19
Adapt the new scverse AIRR data structure
#261 opened by grst - 3
- 2
- 0
transfer more columns
#192 opened by zktuong - 2
The truth value of a Series is ambiguous. Use a.empty, a.bool(), a.item(), a.any() or a.all()
#251 opened by colin-leeyc - 7
Determine which receptor arms to define clones by
#299 opened by Ngort - 1
speed up minimum spanning tree step
#336 opened by zktuong - 0
- 4
- 6
- 0
Mouse VDJ Data
#311 opened by zktuong - 2
- 3
Add outfile_dir to define_clones
#282 opened by Ngort - 0
pandas.DataFrame.iteritems() deprecated
#294 opened by zktuong - 0
tigger pipeline not working on master
#292 opened by zktuong - 3
Define clones within each group
#279 opened by Ngort - 0
UnboundLocalError: local variable 'dist_ham' referenced before assignment
#277 opened by zhouzhendiao - 3
Singularity not finding meta file
#274 opened by obrien-james - 1
Installation error using Singularity: FATAL: While getting image info: error decoding image: invalid ObjectId in JSON
#275 opened by hoonghim - 3
Manual preprocessing with Pandas>1.4+
#272 opened by bpr4242 - 4
Running the google colab version, I am getting a type error at step 3 when importing dandelion as ddl
#270 opened by savitaj - 0
org in reassign_alleles and creategermlines not used
#257 opened by zktuong - 14
- 9
Singularity pre-processing mouse
#238 opened by guillemsanchezsanchez1996 - 0
singularity container doesn't accept org as argument
#236 opened by zktuong - 33
Kernel dies while generating clone network
#235 opened by asadsaba - 0
expose *VDJ_main and *VJ_main as a default column
#225 opened by zktuong - 0
- 4
non-10x input (just fasta) e.g. immunoseq
#232 opened by zktuong - 2
Parsing auxiliary data paths when running run_igblastn
#233 opened by chuckzzzz - 0
palette in rarefaction plot not used
#226 opened by zktuong - 1
Restore global pairwise distance calculation
#217 opened by zktuong - 2
sfdp layout doesn't scale well with large datasets
#219 opened by zktuong - 0
change rarefaction output
#227 opened by zktuong - 0
- 0
colab notebook update
#215 opened by zktuong - 1
fastq
#213 opened by saramoein372 - 0
- 0
create tests for _trajectory.py
#195 opened by zktuong - 0
allow calculate threshold to save plot
#190 opened by zktuong - 2
double nan thing in plots?
#191 opened by zktuong - 14
Singularity having trouble with pathing
#199 opened by wkwong-henlix - 3