zktuong/dandelion

Restore global pairwise distance calculation

zktuong opened this issue · 1 comments

zktuong commented

Description of the issue

Wither version 0.2.4 onwards, the decision was to speed up the calculation only per clone, but i would like to try and reimplement a global pairwise distance calculation.

Perhaps i could try tcrdist3's approach with pwseqdist?

zktuong commented

this might be a partial solution to #219, can use umap afterwards?