Pinned issues
Issues
- 0
Pandas 1.5.0 clash?
#180 opened - 0
test for makeblastdb needs to be tweaked
#179 opened - 0
numba failing github actions
#177 opened - 0
add multimapping pipeline for BCRs as well
#176 opened - 0
db-all does not contain post-tigger data.
#175 opened - 3
Quick question
#174 opened - 1
somatic hypermutation
#173 opened - 0
documentation error
#171 opened - 16
COVID-19 PBMC Ncl-Cambridge-UCL
#169 opened - 0
- 1
unassigned clone id
#163 opened - 27
I am confused, and need your help
#162 opened - 3
dandelion on bulk data
#160 opened - 0
- 8
- 0
[BUG] min_size in generate_network
#155 opened - 1
[BUG] allow manual paths for `germline`
#154 opened - 4
[BUG] scirpy conversion - rename productive
#153 opened - 5
- 11
- 9
- 1
[BUG] scikit-bio and rpy2 dependency updates
#141 opened - 1
[QUESTION]
#139 opened - 0
[BUG] preprocessing bugs
#133 opened - 0
[QUESTION]
#128 opened - 5
[QUESTION]
#127 opened - 8
Problems with manual preprocessing
#126 opened - 0
updates to singularity definition file
#125 opened - 0
[BUG] nxviz dependency update
#123 opened - 0
- 0
- 6
ddl.pp.calculate_threshold issue
#119 opened - 1
Combining samples
#106 opened - 13
Network generation
#105 opened - 0
Extracting the cell_id from the network
#104 opened - 1
Singularity error
#102 opened - 1
Tree from BCR clone_id after BCR clustering
#101 opened - 1
filtered_feature_bc_matrix.h5
#100 opened - 25
- 7
BCR pre-processing
#98 opened - 0
AIRR-C ratification issues to address
#97 opened - 0
- 0
compatibility with TCR data
#81 opened - 0
Singularity path
#79 opened - 2
- 1
running without filtered h5 file
#77 opened - 0
- 1
- 1
mutation counting
#68 opened - 1
tests failing for macosx python 3.8
#67 opened