zktuong
I'm a Group leader at The University of Queensland on Pediatric Systems Immunology and I use R and python to analyse lots of single-cell RNAseq data
The University of Queensland
zktuong's Stars
pybliometrics-dev/pybliometrics
Python-based API-Wrapper to access Scopus
emdann/milopy
Python implementation of Milo for differential abundance testing on KNN graph
ku1ik/vim-monokai
Monokai color scheme for Vim converted from Textmate theme
slowkow/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
cew88/AutoCAT
kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
constantAmateur/cellSignalAnalysis
Identify major cellular signals in bulk transcriptomes
wilsonjr/humap
Hierarchical Uniform Manifold Approximation and Projection
zktuong/ktplotspy
Python library for plotting Cellphonedb results. Ported from ktplots R package.
se2p/pynguin
The PYthoN General UnIt Test geNerator is a test-generation tool for Python
parashardhapola/scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
jrderuiter/pybiomart
A simple pythonic interface to biomart.
TheoMichelot/hmmTMB
Fit hidden Markov models using Template Model Builder (TMB): flexible state-dependent distributions, transition probability structures, random effects, and smoothing splines.
Teichlab/sctk
paulbrodersen/netgraph
Publication-quality network visualisations in python
omnideconv/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
broamski/aws-mfa
Manage AWS MFA Security Credentials
califano-lab/single-cell-pipeline
regeneron-mpds/ICON
colin-leeyc/CLpseudobulk
Pseudobulk analysis for scRNAseq with bootstrapping
BayraktarLab/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
Teichlab/Pan_fetal_immune
Collection of scripts for analysis of pan fetal immune atlas
sunduanchen/Scissor
Scissor package
brianpenghe/python-genomics
A set of files to do genomics analysis on python
myles-lewis/glmmSeq
Gene-level general linear mixed model
zktuong/dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
ncborcherding/scRepertoire
A toolkit for single-cell immune profiling
immunomind/immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
ventolab/CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
brianpenghe/ArchR-plus
Expanded functions for the ArchR package for scATAC-seq analysis