zktuong

zktuong's Stars

• actions/setup-node

  Set up your GitHub Actions workflow with a specific version of node.js

  Language:TypeScript3.7k1174581.2k

• sickill/vim-monokai

  Monokai color scheme for Vim converted from Textmate theme

  Language:Vim Script1.4k3931605

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python5451011759

• pybliometrics-dev/pybliometrics

  Python-based API-Wrapper to access Scopus

  Language:Python39919231124

• ponnhide/pyCircos

  python Circos

  Language:Python318112366

• wilsonjr/humap

  Hierarchical Uniform Manifold Approximation and Projection

  Language:Jupyter Notebook211568

• slowkow/harmonypy

  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

  Language:Python18462622

• lmcinnes/glasbey

  Algorithmically create or extend categorical colour palettes

  Language:Python170357

• kharchenkolab/numbat

  Haplotype-aware CNV analysis from single-cell RNA-seq

  Language:R157917322

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python14145518

• caleblareau/mgatk

  mgatk: mitochondrial genome analysis toolkit

  Language:Python9888625

• diazlab/CONICS

  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

  Language:R7384128

• phbradley/TCRdock

  python tools for TCR:peptide-MHC modeling and analysis

  Language:Python646199

• emdann/milopy

  Python implementation of Milo for differential abundance testing on KNN graph

  Language:Jupyter Notebook552226

• mossjacob/pyslingshot

  Python implementation of the Slingshot pseudotime algorithm

  Language:Jupyter Notebook461108

• zktuong/ktplotspy

  Python library for plotting Cellphonedb results. Ported from ktplots R package.

  Language:Python4021710

• tanlabcode/CytoTalk

  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.

  Language:R3311210

• IdoSpringer/ERGO-II

  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction

  Language:Python303146

• BradBalderson/Cytocipher

  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.

  Language:Jupyter Notebook28246

• mhtchan/packcircles

  A pure Python implementation of a circle packing algorithm

  Language:Python20504

• ncborcherding/Ibex

  Using BCR and expression for sequence embedding

  Language:R18351

• Teichlab/Genes2Genes

  Aligning gene expression trajectories of single-cell reference and query systems

  Language:Jupyter Notebook18203

• constantAmateur/cellSignalAnalysis

  Identify major cellular signals in bulk transcriptomes

  Language:Python113

• cew88/AutoCAT

  Language:Python9104

• pritykinlab/ulipstic-analysis

  Language:Jupyter Notebook8103

• scverse/scverse-io

  Read various formats into AnnData and MuData

  3211

• stop-pre16/lmerSeq

  lmerSeq

  Language:HTML3001

• hmirin/MotifBoost

  A library for the Immune Repertoire Classification Problem

  Language:Python2101

• brianpenghe/linuxshell-genomics

  A set of basic scripts to handle genomics tasks using linux shell

  Language:Shell1100

• njbradley/bcr-dist

  A scientific library that computes the relative distances between bcr sequences

  Language:C++11