slowkow/harmonypy

Issues

• ValueError: operands could not be broadcast together with shapes

  #10 opened 2 years ago by DennisPost10
  9

• Results not reproducible

  #24 opened a year ago by hurleyLi
  18

• Will the latest R harmony updates be propagated to the harmonypy

  #33 opened 6 months ago by deevdevil88
  1

• Error in running large dataset

  #32 opened 7 months ago by zhou-1314
  2

• AttributeError: 'NoneType' object has no attribute 'split'

  #31 opened 9 months ago by VivianQM
  5

• Reference mapping option

  #30 opened a year ago by dhoanghiep
  2

• sklearn.cluster.KMeans issue with kmeans_single() and threadpool_limits()

  #29 opened a year ago by shivamjgandhi
  4

• Unique key is not in pandas describe

  #22 opened 2 years ago by Arkkienkeli
  3

• Add converged status to harmony object

  #23 opened 2 years ago by potulabe
  1

• Build changes have broken Conda install

  #21 opened 2 years ago by pinin4fjords
  1

• Try filprofiler

  #7 opened 4 years ago by slowkow
  1

• Runharmony with R and run_harmony with Python produced different results

  #18 opened 2 years ago by zy-fang
  1

• Harmony with two or more covariates

  #19 opened 2 years ago by Sayyam-Shah
  3

• Running multiple instances of the same variable in vars_use.

  #16 opened 2 years ago by FFB-Lab
  5

• Feature request: plot convergence

  #11 opened 2 years ago by JATC1024
  1

• run harmonypy true_divide error

  #15 opened 3 years ago by gmoore5
  3

• feature request:

  #14 opened 3 years ago by dangeles
  2

• How to get the result after running harmony?

  #13 opened 3 years ago by HelloWorldLTY
  2

• ValueError: operands could not be broadcast together

  #12 opened 3 years ago by swemeshy
  1

• How to cite this work?

  #9 opened 3 years ago by burtonrj
  2

• Question re variance explained from harmony-corrected components

  #6 opened 4 years ago by kathrinjansen
  4

• Harmonypy results with anndata

  #5 opened 4 years ago by 321356766
  4

• Error when trying to run Harmony with multiple covariates

  #4 opened 4 years ago by liboxun
  3

• Failed to set number of max iterations to more than 10

  #3 opened 4 years ago by liboxun
  2