emdann/milopy

Issues

• error with milo.count_nhoods(adata, sample_col="sample")

  #46 opened 4 months ago by yebo085
  2

• milo.make_nhoods(combined_emb) fails if 'X' was used for nearest neighbors

  #44 opened 9 months ago by canergen
  1

• make_nhoods Error: Mean of empty slice.

  #43 opened 9 months ago by jflusche
  2

• Fix DA_nhoods warning from rpy2

  #1 opened a year ago by emdann
  0

• DA_nhoods() .iteritems deprecated

  #40 opened a year ago by james-cranley
  3

• annotate_nhood error

  #41 opened a year ago by ali-harasty
  2

• Error in make_nhoods if the reduced dims are in pandas.DataFrame

  #34 opened a year ago by emdann
  1

• plotNhoodExpressionDA in milopy?

  #38 opened a year ago by ilibarra
  0

• Bug: errors if no cells covered for a certain sample

  #36 opened a year ago by emdann
  0

• Interpret the clustering result

  #35 opened a year ago by ZhenjiangFan
  2

• AttributeError: recarray has no attribute columns

  #33 opened a year ago by PGmajev
  0

• Get all cells of a neighborhood given the index_cell

  #32 opened 2 years ago by vronii-k
  2

• Where can I find the information about to which neighborhood a cell belongs

  #29 opened 2 years ago by ZhenjiangFan
  2

• Assigning neighbors_key in milopy.core.make_nhoods

  #31 opened 2 years ago
  1

• Native python implementation for NB-GLM instead of `edgeR`

  #2 opened 3 years ago by emdann
  9

• Error in glmFit.default(sely, design, offset = seloffset, dispersion = 0.05, : nrow(design) disagrees with ncol(y)

  #28 opened 2 years ago by Mari123i
  2

• Add informative error when running plot_nhood_graph before graph construction

  #13 opened 2 years ago by emdann
  0

• Can't use model.contrasts with categorical variables

  #4 opened 2 years ago by emdann
  2

• Unable to save adata.uns["nhood_adata"]

  #5 opened 2 years ago by jan-domke
  2

• ValueError: Length mismatch

  #11 opened 2 years ago by DunxinShen
  2

• plotNhoodGraphDA in python version

  #7 opened 2 years ago by alitinet
  4

• Retrieving adata.obs_names belonging to each adata.uns["nhood_adata"].obs_names

  #6 opened 2 years ago by castaway1990
  3