canergen
Computational Biology PostDoc at UC Berkeley and Weizman Institute of Science Clinician Scientist at University Hamburg
University of California BerkeleyBerkeley
Pinned Repositories
bbknn
Batch balanced KNN
caching-decorator
Caching Decorator
celltypist
A tool for semi-automatic cell type classification
cmap2d
A small library for generating and sampling 2D RGB colormaps.
embedding-scvi
goatools
Python scripts to find enrichment of GO terms
milopy
Python implementation of Milo for differential abundance testing on KNN graph
OnClass
Single cell typing based on cell ontology
openproblems
Formalizing and benchmarking open problems in single-cell genomics
openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
canergen's Repositories
canergen/bbknn
Batch balanced KNN
canergen/caching-decorator
Caching Decorator
canergen/celltypist
A tool for semi-automatic cell type classification
canergen/cmap2d
A small library for generating and sampling 2D RGB colormaps.
canergen/embedding-scvi
canergen/goatools
Python scripts to find enrichment of GO terms
canergen/milopy
Python implementation of Milo for differential abundance testing on KNN graph
canergen/OnClass
Single cell typing based on cell ontology
canergen/openproblems
Formalizing and benchmarking open problems in single-cell genomics
canergen/openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
canergen/PopV
canergen/popv-reproducibility
Reproducibility for popV
canergen/scanorama
Panoramic stitching of heterogeneous single cell transcriptomic data
canergen/scvi-tools
Deep probabilistic analysis of single-cell omics data
canergen/scvi-tutorials
Notebooks used in scvi-tools tutorials