Pinned Repositories
17_03_RSEM_Pipeline
Pipeline
2020STARProtocols_pipeline
This is the pipeline of 2020 STAR Protocols
2ndGS_Pipelines
Perl 5 and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.
Bioinformatics-Software-Tools
BWA-MEME
Faster BWA-MEM2 using learned-index
CircRNAPipeline
gtracks
plot genome track data (for example from a BigWig file)
my_binder
Teach-Bioinformatics-R-dataviz
Materials for "Teaching Bioinformatics and R for dataviz course" june-August 2019 in Majorbio
zm-git-dev
My personal repository
zm-git-dev's Repositories
zm-git-dev/awesome
😎 Awesome lists about all kinds of interesting topics
zm-git-dev/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
zm-git-dev/Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
zm-git-dev/bio-nextflow
nextflow pipeline
zm-git-dev/ChIPLine
ChIP-seq analysis pipeline
zm-git-dev/CNVMotif
zm-git-dev/FAMSA
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
zm-git-dev/fastq-dl
Download FASTQ files from SRA or ENA repositories.
zm-git-dev/fastq-filter
A fast FASTQ filter program.
zm-git-dev/gget
gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.
zm-git-dev/knotAnnotSV
A simple script to create a customizable html file from an AnnotSV output.
zm-git-dev/latch_trinity
Implementation of Trinity de novo transcriptome assembly on the Latch Bio platform
zm-git-dev/msPIPE
zm-git-dev/NGS-Data-Charmer
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake.
zm-git-dev/PanACoTA
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
zm-git-dev/phaser
phasing and Allele Specific Expression from RNA-seq
zm-git-dev/Pipelines-Wrappers
ATACseq, ChIPseq, RNAseq, WGS, PLAR and cisVar pipeline wrappers
zm-git-dev/pRNASeqTools
plant NGS analysis
zm-git-dev/PseudogenePipeline
zm-git-dev/quast
Genome assembly evaluation tool
zm-git-dev/RicePangenomeEvolution
scripts used in Rice Pangenome Projects (Evolution).
zm-git-dev/RNAseq_pipeline-2
zm-git-dev/SAP_WGS
Whole-genome sequencing of the Sorghum Asssociation Panel
zm-git-dev/sra_tools
Download sequence data from the SRA
zm-git-dev/TGG
tomato graph pangenome
zm-git-dev/The-Python-Graph-Gallery
A website displaying hundreds of charts made with Python
zm-git-dev/Timema_asex_genomes
Code for "Convergent consequences of parthenogenesis on stick insect genomes" manuscript
zm-git-dev/transXpress
transXpress: a Snakemake pipeline for rapid de novo transcriptome assembly and annotation
zm-git-dev/Figure
作图脚本
zm-git-dev/Genome-annotation-pipeline
Genome annotation