Pinned Repositories
ACTION
Archetypal analysis for Cell Type identificatION (ACTION)
Anchor
This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
germcell
Single-cell RNA-seq analysis of human germline cells and their niche cells
germcellshiny
Shiny of Gem Cell Expression
HECA
Human embryonic cell altas
RSCORE
scRNAseq_workflow_benchmark
Workflow for the analysis fo single-cell RNASeq data using R/bioconductor
Texomer
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
zorrodong.online
Zorro's Homepage
zorrodong's Repositories
zorrodong/Anchor
This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
zorrodong/CellBench_data
This contains the dataset for comparing scRNA-seq analysis methods
zorrodong/CellFishing.jl
Fast and scalable cell search tool
zorrodong/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
zorrodong/ChIPseeker
:dart:ChIP peak Annotation, Comparison and Visualization
zorrodong/chromstaR
Combinatorial and differential ChIP-seq analysis in R
zorrodong/clonealign
Bayesian inference of clone-specific gene expression estimates by assigning single-cell RNA-seq to clones
zorrodong/dismay
Calculation of distance metrics for matrices
zorrodong/eoulsan
A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
zorrodong/epic2
Ultraperformant reimplementation of SICER
zorrodong/garnett
Automated cell type classification
zorrodong/geosketch
Geometry-preserving random sampling
zorrodong/griph
Graph Inference of Population Heterogeneity.
zorrodong/Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
zorrodong/JEFworks.github.io
zorrodong/M3Drop
zorrodong/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
zorrodong/NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
zorrodong/paga
Mapping topologies of complex manifolds.
zorrodong/peco
Predict cell cycle phase in a continuum in single-cell RNA-seq data analysis
zorrodong/propr
An R package to calculate proportionality between vectors of compositional data
zorrodong/R-style-guide
Best practices for readable, sharable, and verifiable R code
zorrodong/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
zorrodong/scGen
Single cell perturbation prediction - https://scgen.readthedocs.io
zorrodong/SCT-MoA
Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"
zorrodong/SEACR
SEACR: Sparse Enrichment Analysis for CUT&RUN
zorrodong/SEQprocess
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
zorrodong/tangent
zorrodong/tn_test
post-clustering differential expression test
zorrodong/topconfects
TOP results by CONfident efFECT Sizes.