Pinned Repositories
affyio
Updated version to handle CEL files
awsome-cell-annotation
BabuLab
Website for BabuLab
cfrac
A R package for deciphering protein-protein interactions (PPIs) and protein complexes from biomedical fractionation profiles.
ShinyCITExpresso
A ShinyApp for visualization and explorering Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) data
SMAD
Latest update of Bioconductor package SMAD
SMED
Statistical Modelling of co-Elution Data to infer protein-protein interactions
zqzneptune.github.io
Personal Github Webpage
zqzneptune's Repositories
zqzneptune/cfrac
A R package for deciphering protein-protein interactions (PPIs) and protein complexes from biomedical fractionation profiles.
zqzneptune/ShinyCITExpresso
A ShinyApp for visualization and explorering Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) data
zqzneptune/affyio
Updated version to handle CEL files
zqzneptune/awsome-cell-annotation
zqzneptune/BabuLab
Website for BabuLab
zqzneptune/BenchElution
Benchmark software packages for scoring biochmical fractionation co-elution data
zqzneptune/RefInt
RefInt: A curated reference interactome with true positives and negatives for benchmarking protein-protein interactions.
zqzneptune/RunEPIC
Run EPIC to predict PPI and macro molecular assemblies from co-elution Data
zqzneptune/SMAD
Latest update of Bioconductor package SMAD
zqzneptune/SMED
Statistical Modelling of co-Elution Data to infer protein-protein interactions
zqzneptune/zqzneptune.github.io
Personal Github Webpage
zqzneptune/Bioinformatics
Bioinformatics analysis scripts, workflows, general code examples
zqzneptune/BIONIC_Docker
Dockerized BIONIC
zqzneptune/bulk_RNA-seq
Best practices, scripts and workflows for performing bulk RNA-seq expression analyses
zqzneptune/callpeaks
Custom peak caller for CUT&TAG data
zqzneptune/copykat
zqzneptune/gene_annotations
zqzneptune/MSblender
Forked from marcottelab/MSblender. Details
zqzneptune/ppiAPMS
[Deprecated]Protein-protein interaction from AP-MS data (ppiAPMS) Please use SMAD(http://bioconductor.org/packages/release/bioc/html/SMAD.html)
zqzneptune/RNAexpresso
R package for transcriptome analysis
zqzneptune/RRNA-seq
R pipeline for RNA-seq analysis with Salmon
zqzneptune/safe-R
R implementation of the Spatial Analysis of Functional Enrichment (SAFE) algorithm
zqzneptune/SalmonTools
Useful tools for building Salmon Index
zqzneptune/scMultiome_analysis_vignette
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
zqzneptune/wccsom
Archived package from CRAN