A collection of custom jupyter notebook widget extensions for biojs visualization components using the jupyter notebook. Uses biopython for parsing and biojs for visualization.
To install biojup from git you will need Jupyter notebook and ipywidgets. Install using conda is the simplest
conda create -n venv jupyter ipywidgets numpy biopython
source activate venv
Alternatively, you can setup a virtual environment (using virtualenv) and install requirements from pip.
vitualenv venv
source venv/bin/activate
pip install -r requirements.txt
Now to install biojup, run the following commands.
git clone https://github.com/zsameem/biojup.git
cd biojup
For a normal install do
python setup.py install
For dev install
python setup.py develop
Render MSA visualizations from clustal files. See examples